Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01076 ATGGTCTCCGAATCCGAACTCATCGGCCGCCTCCGCGAGTTCCTCCGGAGCTCCGACCTCAACACCACCACCACCGCCACCGTCCGCCGCCAGTTGGAGGCTGATTTCGGAATCGATTTATCCCACCGCAAGGCATTCATTAGGGAACAGGTCGACTTGTTCCTCCAGACCGAGCACAACCAACCGCAACAACAACAACAACAACAAAACGACGACGTACCAGAAGACGAAGAAGAAGATGGCCCTGATAATCCCGAGCAAAGCCAACCATCCGATACCAAGGAAGAATCCGAAGAAGACGACGATAACGACGAAGAGGAACGAGATAAACCTAAGCATGCCAAAAATGCGAAGAAGAATAAAGGACGATCTAACAAGTTAGGTGATGAGGTAGTAAAGAAAAGAGGTGGTGGATTTTGCAAATTATGTAGCCTGTCTCCACAGCTTCAGGAATTCGTGGGAGCTCCAGAAATGGCCAGGACTGAGGTTGTTAAGCAATTATGGGTCTATATTAAGGAGAAAAATTTGCAAGACCCAAATAATGGACGGAATATAATTTGCGATGAGCAATTGCGGGCTCTTTTTAATGTCAACTCCATCAACATGTTCCAAATGAATAAAGTGTTGTCGAAGCATATCTGGCCATTGGATTCCGATGATGTTGTCCAGGTGAAGTCCAAACCAAAGGAAAAACAGAAGAAGCAAGAGAGAGATGATGATTCAGATGAGCCAAAAAGAAAGGAAAAACGGCAGAAGGGAGGAGGGAAATCAGGTTTTCTTGCTCCTCTTCAGCTATCAGATGCCCTTGTAAACTTCCTTGGTACCGGAGAAAGTGAGTTATCAAGAACGGATGTTATAAAAAGAATGTGGGATTACATTAAAGGAAACAACCTTCAGGATCCTTCTAACAAGAGGCAAATACTATGTGACGAGAAGCTGAAAGAACTCTTTGATGTCGACTCCTTCAATGGCTTCACAGTTACAAAACTGCTGGCACCTCATTTTATAAAGACACAGCAGTGA 1023 0.4497 MVSESELIGRLREFLRSSDLNTTTTATVRRQLEADFGIDLSHRKAFIREQVDLFLQTEHNQPQQQQQQQNDDVPEDEEEDGPDNPEQSQPSDTKEESEEDDDNDEEERDKPKHAKNAKKNKGRSNKLGDEVVKKRGGGFCKLCSLSPQLQEFVGAPEMARTEVVKQLWVYIKEKNLQDPNNGRNIICDEQLRALFNVNSINMFQMNKVLSKHIWPLDSDDVVQVKSKPKEKQKKQERDDDSDEPKRKEKRQKGGGKSGFLAPLQLSDALVNFLGTGESELSRTDVIKRMWDYIKGNNLQDPSNKRQILCDEKLKELFDVDSFNGFTVTKLLAPHFIKTQQ 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01076 340 Gene3D SWIB/MDM2 domain 253 340 IPR036885 -
Phco4g01076 340 SMART swib_2 259 340 IPR019835 -
Phco4g01076 340 SMART swib_2 139 218 IPR019835 -
Phco4g01076 340 MobiDBLite consensus disorder prediction 224 254 - -
Phco4g01076 340 ProSiteProfiles SWIB/MDM2 domain profile. 138 215 IPR003121 -
Phco4g01076 340 ProSiteProfiles DEK C-terminal (DEK-C) domain profile. 1 56 IPR014876 -
Phco4g01076 340 FunFam Upstream activation factor subunit 133 221 - -
Phco4g01076 340 Pfam SWIB/MDM2 domain 142 213 IPR003121 -
Phco4g01076 340 Pfam SWIB/MDM2 domain 262 335 IPR003121 -
Phco4g01076 340 SUPERFAMILY DEK C-terminal domain 3 56 - -
Phco4g01076 340 MobiDBLite consensus disorder prediction 58 130 - -
Phco4g01076 340 CDD SWIB-MDM2_like 143 213 - -
Phco4g01076 340 Pfam DEK C terminal domain 2 55 IPR014876 -
Phco4g01076 340 Gene3D - 1 59 - -
Phco4g01076 340 Gene3D SWIB/MDM2 domain 133 221 IPR036885 -
Phco4g01076 340 CDD SWIB-MDM2_like 263 335 - -
Phco4g01076 340 MobiDBLite consensus disorder prediction 71 85 - -
Phco4g01076 340 MobiDBLite consensus disorder prediction 224 260 - -
Phco4g01076 340 SUPERFAMILY SWIB/MDM2 domain 255 340 IPR036885 -
Phco4g01076 340 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 6 218 - -
Phco4g01076 340 ProSiteProfiles SWIB/MDM2 domain profile. 258 337 IPR003121 -
Phco4g01076 340 SUPERFAMILY SWIB/MDM2 domain 135 217 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01076 Phco-Chr4 8645665 8649939 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Phco4g01076 SWIB 3.1e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01076 4 8645665 8649939 Phco4g01076 4 8645665 8649939 ECH