Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g01058 ATGACAGGGTCATCATTAAAGGGGCATGGACTGTTAGAGGAAGGAAGTTCACGTGGAAAAAAGTTTGGGAAGCCAAAGAAAGATGAATTCGATGGTTATAACTCTGATAACCATCCAAGAAAAAATAGCCCTGTCACGTTGGCGGCAAATCATTTGGATCCTCAAATGGCAGTAGAAAGTACTTCTTACGAGCCTTCCCTTTCTCCCTTATCCAAATCCCCATGGTCCTCTCACATGAACGAAGAAGCTCTAATTTCCAACGACAAAGAGGCTTTAATAGGGTCCCTAGTCCGAGAAGAGGGTCACATTTACTCCCTCGCTGCAACCAAGGACTTGTTATACACAGGTTCAGATAGTAAAAATATTCGCGTGTGGAAGAACCAAAGGGAGTTCACGGGGTTCAAATCCAACAGTGGCTTGGTGAAAGCGATTGTGATTGCGGGAGAAAAAATCCTCACAGGACACCAAGATGGAAGGATAAGAGTGTGGAAAGTTTCGGGAAAAAATGACCAACAACACAAGCGTGTGGCAACATTGCCAACGTTAAGAAACTACATCAAATGTTCGGTGAAACCAAGTAATTACGTGGAAGTGAAACGACACCGCAATGTGTTGTGGATCAAACACTACGACGCCATTTCATGCCTGGGCATAACAGACGATCATTCTTATATATACTCTGCCTCATGGGATAAAACTTTCAAAGTATGGCGAATGTCGAATTTTAAGTGTCTAGAGTCCGTGACAGCACATGATGATGCTGTTAATGCACTTGTTGTGGGGTTGGAGAACTTGGTTTTCACGGGCTCAGCCGATGGCACGGTTAAGATTTGGCGGCGCGATATTCAAGGGAAAGGGACAAAACATTTTTTCTCGAACACATTGTTGAAAAAAGAGTGTGCGGTGACGGCGTTAGCCATGAGCGTTGATGGGAGTTTTTTATATGCCGGGTCTTCCGATGGGTTGGTGAATTACTGGGCGAGAGAGACAAATCTGGAGCACAGGGGTGTATTGAAGGGACACAAGTTGGCGGTTTTGTGTTTGGCTGCAGCAGGAAATTTGGTGTTCAGTGGGTCTACTGACATGTCCATATGTGTATGGAAGAGGTCATTGAGTGAGGAGCACACATGCGTTCATGTTTTATCCGGCCACGCTGGCCCAGTTAAGTGTCTGGCGACGGAGCGGGATCCCGACGCCATGTGCAACGAACGACGGTGGATTTTGTACAGTGGTAGTTTGGATAAGTCTGTAAAGATGTGGAAAGTCTCCGAGAATGCAACTCCACAAAACAATCACCAACCACCAAAACTTAGTGTTGATCACTTCCCCAGACTCTCATCATTCAAGAGATCGAACTCCAAGAGATTCTAG 1371 0.4551 MTGSSLKGHGLLEEGSSRGKKFGKPKKDEFDGYNSDNHPRKNSPVTLAANHLDPQMAVESTSYEPSLSPLSKSPWSSHMNEEALISNDKEALIGSLVREEGHIYSLAATKDLLYTGSDSKNIRVWKNQREFTGFKSNSGLVKAIVIAGEKILTGHQDGRIRVWKVSGKNDQQHKRVATLPTLRNYIKCSVKPSNYVEVKRHRNVLWIKHYDAISCLGITDDHSYIYSASWDKTFKVWRMSNFKCLESVTAHDDAVNALVVGLENLVFTGSADGTVKIWRRDIQGKGTKHFFSNTLLKKECAVTALAMSVDGSFLYAGSSDGLVNYWARETNLEHRGVLKGHKLAVLCLAAAGNLVFSGSTDMSICVWKRSLSEEHTCVHVLSGHAGPVKCLATERDPDAMCNERRWILYSGSLDKSVKMWKVSENATPQNNHQPPKLSVDHFPRLSSFKRSNSKRF 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g01058 456 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 50 426 IPR045182 -
Phco4g01058 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 248 278 - -
Phco4g01058 456 SMART WD40_4 89 126 IPR001680 GO:0005515
Phco4g01058 456 SMART WD40_4 374 421 IPR001680 GO:0005515
Phco4g01058 456 SMART WD40_4 200 238 IPR001680 GO:0005515
Phco4g01058 456 SMART WD40_4 127 164 IPR001680 GO:0005515
Phco4g01058 456 SMART WD40_4 288 327 IPR001680 GO:0005515
Phco4g01058 456 SMART WD40_4 331 368 IPR001680 GO:0005515
Phco4g01058 456 SMART WD40_4 241 279 IPR001680 GO:0005515
Phco4g01058 456 MobiDBLite consensus disorder prediction 1 46 - -
Phco4g01058 456 SUPERFAMILY WD40 repeat-like 99 427 IPR036322 GO:0005515
Phco4g01058 456 MobiDBLite consensus disorder prediction 13 36 - -
Phco4g01058 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 326 IPR001680 GO:0005515
Phco4g01058 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 206 247 IPR001680 GO:0005515
Phco4g01058 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 368 IPR001680 GO:0005515
Phco4g01058 456 Pfam WD domain, G-beta repeat 243 278 IPR001680 GO:0005515
Phco4g01058 456 Pfam WD domain, G-beta repeat 209 237 IPR001680 GO:0005515
Phco4g01058 456 Pfam WD domain, G-beta repeat 376 421 IPR001680 GO:0005515
Phco4g01058 456 Pfam WD domain, G-beta repeat 299 326 IPR001680 GO:0005515
Phco4g01058 456 Pfam WD domain, G-beta repeat 336 368 IPR001680 GO:0005515
Phco4g01058 456 Pfam WD domain, G-beta repeat 100 126 IPR001680 GO:0005515
Phco4g01058 456 CDD WD40 100 421 - -
Phco4g01058 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 248 278 IPR001680 GO:0005515
Phco4g01058 456 FunFam BnaA09g28200D protein 196 283 - -
Phco4g01058 456 Gene3D - 83 200 IPR015943 GO:0005515
Phco4g01058 456 Gene3D - 201 441 IPR015943 GO:0005515
Phco4g01058 456 PRINTS G protein beta WD-40 repeat signature 151 165 IPR020472 -
Phco4g01058 456 PRINTS G protein beta WD-40 repeat signature 408 422 IPR020472 -
Phco4g01058 456 PRINTS G protein beta WD-40 repeat signature 266 280 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g01058 Phco-Chr4 8493862 8495232 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g01058 4 8493862 8495232 Phco4g01058 4 8493862 8495232 ECH