Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00988 ATGGGAGACTTCAACAACAACAACAACAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGCACCAAAGCCCAGAACCGTTCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCATCCGACTGGTCTCACAGCGAACTTGCTGAAGCTATTCGAACCTAGGCCTCCCTTGGAGTACAAACCGCCGCCGGAGAAACGGAAATGTCCACCGTTGACAGGGATGGCACAATTTGTGAGCAAATTTGCCGAGCCTGGGGATCCAGAATATTCACCACCTATTCCAGAAACCGAAACTCCTGCACAAAAAAGGGCCAGAATACACAAGCTAAGACTAGAAAAGGGAGCTGCAAAGGCTGCTGAAGAGCTTGAGAAATATGATCCACAGAATGACCCAAATGTATCTGGGGATCCATACAAGACATTGTTTGTGGCTAAACTTAGTTACGAGACCACTGAAAGCAGAATCAAAAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTGCTGACAAAGAGACTAATAAGCCCAAGGGTTATGCTTTCATTGAGTTTCTGCATACAAGAGACATGAAAGCTGCTTATAAACAGGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGCCGCCTGGGTGGTGGGCTTGGTACTACTAGAGTTGGGGGAGAAGAAGTTAATCAGCGACATTCTGGGAGGGAGCAACAGCAGTCTCGTTCTGAAGAACCAAGAGCGCGAGATGACCGGCATAATGATAGAGACAGGGAAATATCACGTGAAAAAGGTAGGGATAGAGACAGAGAACGGGAGCGATCACGGGAGCATTCTCATGAAAGGGTCAGGGATCGTGACTATAGAGAGGATAGACACCACAGAGACCGAGACAGGACAAGGGACAGAGACAGGGAAAGAGATAGAGACCGTGGACGTGATCGAGATAGGGCACGGGATCGTGACAGGGATAGAGACCGTGATCGACATCGTGAAAGGGATAGAGATTATGAAGTTGGGGACACTGAACGACGTTCACGTGATAGGGAGTCTGAATATGATCGGGTTGAATCTAAACAGGAGAGGGACCAACATGGGGAAAGGAATCGTGACTATGAGCCCGAGGATGATCGTGGTAGGCATAACCACTATGAGCATGGACGTCGACATGCTGACCCTGCTCATGACCCTGAGCAGTATGACCACTACCATCATGGAGATGATCGTGGTGATCATTACAATCAGTATCATGACCATGATAGGATGGAAGATGACTACCATGCAGGACGTGCAACATCTGAATCACATGAAAAGGAGAAAAGTCATGGTACAGACCGTGAATATCGTCGCTCAGAGAGATCTCATTCCCGGGAGTATGACTACTAG 1440 0.484 MGDFNNNNNNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDPEYSPPIPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPQNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKETNKPKGYAFIEFLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEEVNQRHSGREQQQSRSEEPRARDDRHNDRDREISREKGRDRDRERERSREHSHERVRDRDYREDRHHRDRDRTRDRDRERDRDRGRDRDRARDRDRDRDRDRHRERDRDYEVGDTERRSRDRESEYDRVESKQERDQHGERNRDYEPEDDRGRHNHYEHGRRHADPAHDPEQYDHYHHGDDRGDHYNQYHDHDRMEDDYHAGRATSESHEKEKSHGTDREYRRSERSHSREYDY 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00988 479 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 65 328 - -
Phco4g00988 479 MobiDBLite consensus disorder prediction 247 479 - -
Phco4g00988 479 CDD RRM_snRNP70 143 233 IPR034143 GO:0030619
Phco4g00988 479 MobiDBLite consensus disorder prediction 87 107 - -
Phco4g00988 479 Gene3D - 131 256 IPR012677 -
Phco4g00988 479 MobiDBLite consensus disorder prediction 226 479 - -
Phco4g00988 479 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 146 215 IPR000504 GO:0003723
Phco4g00988 479 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 47 135 IPR022023 -
Phco4g00988 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 144 222 IPR000504 GO:0003723
Phco4g00988 479 SMART rrm1_1 145 218 IPR000504 GO:0003723
Phco4g00988 479 SUPERFAMILY RNA-binding domain, RBD 132 244 IPR035979 GO:0003676
Phco4g00988 479 FunFam U1 small nuclear ribonucleoprotein 70 kDa 131 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00988 Phco-Chr4 7814232 7818402 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00988 4 7814232 7818402 Phco4g00988 4 7814232 7818402 ECH