Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00981 ATGGAAGAAAAGAAGAGAAAGGGTGGGAGGCACACGCACAAACACATAATCGGAATCTCCAGTATTCAATCGGAGACAACACCAACTCAGCCGGAAGAAGCAGAGTGCGCGGCGGAAATGTGGCGGTGCATCGCACGGGGACTTCGTGGAGCTGCTTCCACCACCAGATCCACCTCCAATCATCCTCACGGATCTTACTCTTCTAGATTCTTCTCCAGTGGGGTTAACTCCTCGTACACTGTGGTGGATCATACTTATGATGCTGTTGTCGTAGGTGCTGGTGGCGCGGGATTAAGAGCTGCTATTGGACTTTCAGAACATGGGTTCAAGACTGCTTGTATCACCAAGCTCTTCCCCACTCGTTCACACACGGTTGCAGCTCAGGGTGGTATAAATGCTGCTTTGGGAAACATGACAGAAGATGACTGGAGGTGGCACATGTATGACACTGTCAAGGGAAGTGATTGGCTAGGTGATCAGGATGCCATCCAGTATATGTGCAGGGAAGCACCAAAAGCAGTCATCGAGCTTGAGAACTATGGTTTACCATTTTCCAGAACAGAGGATGGAAAAATATATCAGCGTGCATTTGGTGGTCAAAGCTTAAACTATGGAAAAGGTGGTCAAGCTTACCGATGTGCATGTGCTGCTGATCGAACTGGGCATGCTTTATTGCACACTCTCTATGGTCAAGCTATGAGACATAATACCCAGTTTTTTGTGGAATATTTTGCATTGGATCTTTTAATGAATAATGATGGCACTTGCCAGGGAGTAATTGCCATGAATATGGAGGATGGAACACTACATCGTTTCCAATCTGCTTCAACAATTTTGGCTACAGGGGGTTATGGTAGAGCATACTTTTCTGCAACCTCAGCACACACATGTACTGGAGATGGCAATGCCATGGTTGCACGTGCTGGTATCCCTCTTGAGGATTTGGAGTTTGTACAATTTCACCCAACGGGTATATATGGAGCAGGTTGCCTTATAACAGAAGGCTCTCGTGGTGAAGGTGGAATTCTCAGGAACAGTGAGGGTGAGCGATTTATGGAACGATATGCCCCTACTGCAAAGGATCTTGCATCAAGAGATGTAGTTTCAAGATCAATGACTATGGAGATTCGGGAAGGTCGTGGTGTAGGACCCCTGAAAGATCACATCTATCTTCACTTGAATCACTTACCCCCAGATGTGCTCAAGGAGAGACTTCCTGGAATATCTGAAACTGCTGCTATTTTTGCTGGTGTGGATGTTACAAAGGAACCCATTCCTGTTTTGCCAACTGTACATTATAACATGGGCGGTATTCCCACAAACCATTATGGAGAGGTGGTTACCATTAAAGGTGACAATCCAGATGCAGTGATTCCTGGATTGATGGCTGCTGGGGAAACAGCCTGTGCATCAGTCCATGGTGCCAATAGGCTTGGTGCAAATTCACTTCTGGATATTGTTGTTTTTGGTAGAGCTTGTGCAAATAGAGTTGCAGAAATCCATAGACCAGGAGAGAAACAAAAGCCTTTAGAGAAAGATGCTGGTCAGAAAACAATTGCATGGCTGGACAAATTGAGAAATTCAAATGGTTCATTGCCAACTTCAAAAATTCGGTTGAATATGCAACGAGTGATGCAAAGCAATGCGGCTGTGTTCCGTACACAAGAAACATTAGAAGAAGGTTGTCAATTAATTGATAAAACGTGGGAGAGCTTCCAGGATGTTAAGGTCAAGGACCGCAGTTTAATATGGAACTCCGACTTGATTGAGACTATTGAGTTGGAAAATCTTTTGATAAATGCTTGCATCACTATGTACTCTGCTGAAGCTAGGAAAGAGAGTAGAGGAGCTCATGCCCGTGAAGACTTCAAGGTTAGAGATGATGAGAACTGGATGAAACACACTGTGGGATACTGGGAGAACGAGAAGGTCCGGTTGGACTACAGGCCAGTGCATTTGAATACATTGGATGATGAGGTTGAATCATTCCCTCCCAAGGCTCGTGTCTATTAA 2013 0.4511 MEEKKRKGGRHTHKHIIGISSIQSETTPTQPEEAECAAEMWRCIARGLRGAASTTRSTSNHPHGSYSSRFFSSGVNSSYTVVDHTYDAVVVGAGGAGLRAAIGLSEHGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLNYGKGGQAYRCACAADRTGHALLHTLYGQAMRHNTQFFVEYFALDLLMNNDGTCQGVIAMNMEDGTLHRFQSASTILATGGYGRAYFSATSAHTCTGDGNAMVARAGIPLEDLEFVQFHPTGIYGAGCLITEGSRGEGGILRNSEGERFMERYAPTAKDLASRDVVSRSMTMEIREGRGVGPLKDHIYLHLNHLPPDVLKERLPGISETAAIFAGVDVTKEPIPVLPTVHYNMGGIPTNHYGEVVTIKGDNPDAVIPGLMAAGETACASVHGANRLGANSLLDIVVFGRACANRVAEIHRPGEKQKPLEKDAGQKTIAWLDKLRNSNGSLPTSKIRLNMQRVMQSNAAVFRTQETLEEGCQLIDKTWESFQDVKVKDRSLIWNSDLIETIELENLLINACITMYSAEARKESRGAHAREDFKVRDDENWMKHTVGYWENEKVRLDYRPVHLNTLDDEVESFPPKARVY 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00981 670 Pfam Fumarate reductase flavoprotein C-term 539 670 IPR015939 GO:0016491
Phco4g00981 670 ProSitePatterns Fumarate reductase / succinate dehydrogenase FAD-binding site. 121 130 IPR003952 GO:0016491
Phco4g00981 670 Gene3D - 510 621 - -
Phco4g00981 670 Pfam FAD binding domain 87 483 IPR003953 -
Phco4g00981 670 FunFam Mitochondrial succinate dehydrogenase flavoprotein subunit 325 428 - -
Phco4g00981 670 PIRSF SDHA_APRA_LASPO 76 659 - -
Phco4g00981 670 Gene3D succinate dehydrogenase protein domain 622 670 - -
Phco4g00981 670 NCBIfam succinate dehydrogenase or fumarate reductase, flavoprotein subunit 87 670 IPR014006 GO:0016627|GO:0022900|GO:0050660
Phco4g00981 670 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain 529 670 IPR037099 GO:0016491
Phco4g00981 670 SUPERFAMILY FAD/NAD(P)-binding domain 78 506 IPR036188 -
Phco4g00981 670 PANTHER SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT 71 670 IPR030664 -
Phco4g00981 670 SUPERFAMILY Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 315 433 IPR027477 -
Phco4g00981 670 Gene3D - 87 494 IPR036188 -
Phco4g00981 670 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 429 494 - -
Phco4g00981 670 FunFam Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial 622 670 - -
Phco4g00981 670 FunFam Succinate dehydrogenase complex, subunit A, flavoprotein (Fp) 75 300 - -
Phco4g00981 670 NCBIfam succinate dehydrogenase flavoprotein subunit 84 670 IPR011281 GO:0006099|GO:0016627|GO:0050660
Phco4g00981 670 FunFam Succinate dehydrogenase flavoprotein subunit (SdhA) 509 625 - -
Phco4g00981 670 Gene3D Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain 325 428 IPR027477 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00981 Phco-Chr4 7748105 7754756 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00981 4 7748105 7754756 Phco4g00981 4 7748105 7754756 ECH
Phco4g00981 4 7748105 7754756 Phco8g00490 8 4652811 4659777 PCT