Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00952 ATGGCGGTTCACGATGACCATGACCCTATGCTCATGGTGCTTCCTTCTCTCTCTCCGCCCAACACCTACCGTGCCGTCGTTATCGGTGGCACCTTTGACCGATTGCATGACGGCCACCGCCTCTTTCTCACCGCTTCTGCGGAAGTGGCAAAGTGCCGGATTGTAATTGGAGTTTGCGACGGTCCTATGTTGGCAAAAAAGCTGTTTGCTGAACTGATACAGCCAGTTGAAGAAAGGATAAATAATGTCAAAAATTTCATAAAGTCTATCAAGCCAGATTTAGAAGTGCAAGCTGTACCAATCACAGATCCGTTTGGCCCTTCCATTGTAGATGAAAATTTGGAGGTTGTGATTGTAAGCAAAGAGACATTACCGGGAGGATTGGCAATAAACAGAAAAAGAGCTGAAAGAGGCCTTTCACAGTTGAAGATTGAAGTTGTGGATTTGCTTTCTGGAGGATCAGGTGAAATTAAGCTGAGTTCATCGATACTACGGAAGATTGAGGCTGAAAAGGAGAAACAACAAAACACGATATCGCAGACGAGGGCTGAAGTTCAAGAGTTACCGTTTTTCTTCGTTCCACATATCCAAGGGATGCTTTTTCGAACTAAAAGAATTTCAAATTGTAGTCACTTGGAGCATTTTTTTCCACGACAAAATCTTGCGTCCATTGAGAAATTTCACTCATTTCTTGAATTTGGCCAAAAGGGGGGGATTTTGCAAAACTTTGCAAAGATGAATGATTTGATGACAAAATCGTTCCTAAGTTATGTGGAACTTAAGAAACAGGCACAGAAGGGCCGTGAAGACGATCTTGACATTGAGACAGGGAGACTCAACCCCACGGAAGACCGCAACCTCTCTCAGTTCTTCCAAGAAGTTGAAGCAATCAAGGTTGAAATGGAAGAGATTACCAATCTCTTATTTGATCTTCAGCAACTGAATGAAGAGGCAAAGTGCACCCACAGTGCCAAAGTTCTTCGTGGCCTAAGGGACCGGATGGAGTCTGACATGGTTGCCGTGCTTCGCAAGGCACGGATTATCAAGGCAACACTTGAGGTTCTTGACAAATCCAACATAGTAAATCATAATTTGTCAGAAATCTACAAAGAGGGGGGCCCCATTGACAGGACCAGAATATCTGTCACAAATGGTTTGAGGGTCAGGCTTAGGGCCATGATGAATGATTTTCAGTCCTTGAGAGACCAAATTCTATCTGATCACAAGGAAGATTTGAAGAGAAGGTACTACACAGCAACGGGTGAGGTTCCCACTGAGGAGGTCATGGAGAAGATGGTTTCTGGGAGTCTCAAAGTGGAGTTTTTGGCTGGGAAAACGGATGCAGAATTGGACACTCAAGTTAGGCATGAGGCAGTGATGGATATCCAGAGGAGTTTGAATAAGCTTCACCAGGTTTTTCTTGATATGGCTGTTCTGGTTGAGACACAGGGAGAAAGCGTGGATAACATTGAGGATAATGTGGCTAATGCGGGTAACTTCATCCATGGTGGAACTAATAGTCTCTACTATGCCAGCCAGATGAAGAAAAAGAACAGAAAGTGGGTCTGTTGGGTTTTTGCTGTGGGGCTGATTATACTACTCGTATGCATCGTTGCAATGTTGTCTTCTTGA 1632 0.4412 MAVHDDHDPMLMVLPSLSPPNTYRAVVIGGTFDRLHDGHRLFLTASAEVAKCRIVIGVCDGPMLAKKLFAELIQPVEERINNVKNFIKSIKPDLEVQAVPITDPFGPSIVDENLEVVIVSKETLPGGLAINRKRAERGLSQLKIEVVDLLSGGSGEIKLSSSILRKIEAEKEKQQNTISQTRAEVQELPFFFVPHIQGMLFRTKRISNCSHLEHFFPRQNLASIEKFHSFLEFGQKGGILQNFAKMNDLMTKSFLSYVELKKQAQKGREDDLDIETGRLNPTEDRNLSQFFQEVEAIKVEMEEITNLLFDLQQLNEEAKCTHSAKVLRGLRDRMESDMVAVLRKARIIKATLEVLDKSNIVNHNLSEIYKEGGPIDRTRISVTNGLRVRLRAMMNDFQSLRDQILSDHKEDLKRRYYTATGEVPTEEVMEKMVSGSLKVEFLAGKTDAELDTQVRHEAVMDIQRSLNKLHQVFLDMAVLVETQGESVDNIEDNVANAGNFIHGGTNSLYYASQMKKKNRKWVCWVFAVGLIILLVCIVAMLSS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00952 543 Gene3D HUPs 25 175 IPR014729 -
Phco4g00952 543 SUPERFAMILY t-snare proteins 285 504 IPR010989 GO:0016020|GO:0016192
Phco4g00952 543 Pfam Cytidylyltransferase-like 28 98 IPR004821 GO:0003824|GO:0009058
Phco4g00952 543 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 449 511 IPR000727 -
Phco4g00952 543 Gene3D - 282 413 - -
Phco4g00952 543 SUPERFAMILY Nucleotidylyl transferase 23 172 - -
Phco4g00952 543 Pfam SNARE domain 487 535 IPR000727 -
Phco4g00952 543 Coils Coil 164 184 - -
Phco4g00952 543 FunFam Bifunctional coenzyme A synthase 25 169 - -
Phco4g00952 543 CDD SynN 287 437 IPR006011 GO:0016020
Phco4g00952 543 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 284 415 - -
Phco4g00952 543 CDD PPAT_CoAS 26 166 - -
Phco4g00952 543 CDD SNARE_syntaxin1-like 451 508 - -
Phco4g00952 543 Coils Coil 297 317 - -
Phco4g00952 543 PANTHER SYNTAXIN 285 532 IPR045242 -
Phco4g00952 543 FunFam Syntaxin 132 444 542 - -
Phco4g00952 543 SMART SynN_4 282 409 IPR006011 GO:0016020
Phco4g00952 543 Pfam Syntaxin 289 484 IPR006011 GO:0016020
Phco4g00952 543 Gene3D - 445 542 - -
Phco4g00952 543 SMART tSNARE_6 444 511 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00952 Phco-Chr4 7539996 7546160 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00952 4 7539996 7546160 Phco4g00952 4 7539996 7546160 ECH