Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00928 ATGAGATCTTCTATGGGTGCTTTCTCTTCCTCCTTTACAAATGTTCGTTCCGCCTCATCATGGTTCGAGTTGTACGCTTCTTTCTCCACATTCATTATGCTTCTGAGAAGCGCAATCAACGATCTCATACCCCAACAAGTTCGCTCTTTCATACACTCAAAACTAAAGTCTTTCTTCACAAGCCGTCAAAAAAGCAACGTTGTCTCGCTTGAGGTCACCGAACTTTGGGATGGCCACACCAACCAACTCTTCCAAGCCGTTCAAGAGTATCTCCCGGCAAGGATCTCCCACTCTTACAAATCCCTCAAAGTTGGGAAACTTTCAAAGCACAAGAACATAATAATGGCAGTGGATGGAAAACAGGAGGTGGTGGATGTATTTGAAAACATCAAGCTCAAATGGAAGCTGGTTGAGCAAAGCTCCCGAAAAGACTCTGATAATCGAGATCCTCTTCGTCCTCGTAAGTCAACGGGTTTCGAGAGGGAGTCGTTTTGTCTAAACTTTGATGAGAAGCATCGAGATGTGGTCATGAACAAGTATCTCTTGCACGTTCTGAACGCATACCAGGAGATGCAAGCTAAGCAGAGAACCATCAAGATCCATTCCATTGGTGGTGGAAGATGTTGGCAGAAAAGCGACTTAACTCATCCAGCATCGTTCAAGTCGCTTGCATTGGATCCAGAGCAAAAGCAGGGAATCATTGATGATTTGGATATGTTTTTGCGGAGGAAGGAACTGTACAAGAAGGTGGGGAAGCCTTGGAAACGTGGCTACCTCTTGTATGGTCCCCCAGGAACAGGAAAATCTAGCCTTATTGCTGCTATGGCCGACTACTTGAAGTTTGATGTGTATGATCTGGAACTAACCTCGGTGTTTTCTAACGCAGACCTCATGCGAACCCTGAAGGAGACATCTAACCGCTCCATCCTCGTCATCGAAGACATCGACTGCAACAGAGAGGTGCATGCTCGATCAAAACCAAAAGGCTTTTCAGATACCGATTCCGATTCCGACAATGACCACAAGCATGTCCAGATTAAGACAAACAGGTTTACTCTGGCGGGTCTGCTTAACAACATAGATGGGTTGTGGTCAGGTGGTGGAGAGGAGCGGATTTTAGTCTTCACTACCAATCACAGAGATAGAATTGACCCAGCGTTGCTGCGCCCTGGTCGTATGGACATGCACATTCACTTGTCCTTCCTCGGAAGCAAGGCATTTCGAACACTAGCTTACAATTACTTAGACGTTGAAGGAGATCATCCACTCTTTCAACAAATTGATGATCTGTTGGAGAAAATACAAGCCACCCCTGCAGAGGTAGCGGAGCAACTAATGAGATACGAGGATCCTGACGTTTGTTTGGAAGCACTCGTTCAATTTCTCCAACAAAAGGCCAAGGAAAGCCTAATTTAG 1416 0.4569 MRSSMGAFSSSFTNVRSASSWFELYASFSTFIMLLRSAINDLIPQQVRSFIHSKLKSFFTSRQKSNVVSLEVTELWDGHTNQLFQAVQEYLPARISHSYKSLKVGKLSKHKNIIMAVDGKQEVVDVFENIKLKWKLVEQSSRKDSDNRDPLRPRKSTGFERESFCLNFDEKHRDVVMNKYLLHVLNAYQEMQAKQRTIKIHSIGGGRCWQKSDLTHPASFKSLALDPEQKQGIIDDLDMFLRRKELYKKVGKPWKRGYLLYGPPGTGKSSLIAAMADYLKFDVYDLELTSVFSNADLMRTLKETSNRSILVIEDIDCNREVHARSKPKGFSDTDSDSDNDHKHVQIKTNRFTLAGLLNNIDGLWSGGGEERILVFTTNHRDRIDPALLRPGRMDMHIHLSFLGSKAFRTLAYNYLDVEGDHPLFQQIDDLLEKIQATPAEVAEQLMRYEDPDVCLEALVQFLQQKAKESLI 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00928 471 ProSitePatterns AAA-protein family signature. 371 389 IPR003960 GO:0005524|GO:0016887
Phco4g00928 471 Pfam ATPase family associated with various cellular activities (AAA) 259 399 IPR003959 GO:0005524|GO:0016887
Phco4g00928 471 Gene3D - 210 397 IPR027417 -
Phco4g00928 471 SMART AAA_5 254 403 IPR003593 GO:0016887
Phco4g00928 471 PANTHER BCS1 AAA-TYPE ATPASE 25 467 - -
Phco4g00928 471 Gene3D - 398 470 - -
Phco4g00928 471 Pfam Domain associated at C-terminal with AAA 43 137 IPR025753 -
Phco4g00928 471 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 450 IPR027417 -
Phco4g00928 471 CDD RecA-like_BCS1 233 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00928 Phco-Chr4 7372398 7373908 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00928 4 7372398 7373908 Phco4g00928 4 7372398 7373908 ECH