Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00912 ATGTTGTTATTGTCTGTCATAGAAAAGGATAACACAAAGCAGCACATTAGGCAGAGTTTGGTTCCAATCATTCGTATAAATATAGAGAAGCAGAGAGCTTGCAATGATACCAAGGACAAGAAGATGACTCCAATGTTGTTGCATGATCAGCTCAAACACAAAGCCATCATTGATGTTGGGAGATTAATGAAGCATGTTGATGAGGGTGGTACCATGCTTGGCGCCACCAGACGCGTAGTTGGGTTCATTCCTAGGAGGTTACGACCAGTGCGGCAAGTGCATGGAGATGAGGATGGCGAAGAGCGTTTACATTTTCACAAGAGCAAAGGTCAACACATTCTCATCAACCCTAGAATTCTTGATACCATCGTTCGCAAATCCGCCATAAATCCAACAGACACTGTCCTCGAAATCGGACCTGGCACAGGCAACCTCACCCTCAAGCTTCTCGAAGCCGCGCACAAGGTAGTAGCCTTCGAGATTGACCACCGCCTGGTCCAGGTTCTTGAGAAGCGTGCTCTTCATCGTGGTCTCAAAGATAAGCTAAGGGTTATTGAAAGAGATGCAATGAAAGCCCCGTTTCCGCGGTTTGATCTTGTTGTGGCCAACATTCCTTATCAGATATCTTCCCCTCTCGTGATCAAACTGGTGTATGGGTCGACGCCGTTTCGGAGTGCCACTCTTCTTCTTCAGAAAGAGTTCGCTCGAAGGTTAGTGGCTAATCCCGGTGACTCTGAGTTTAGCCGGTTGTCGGTGAATGTGAAGCTTCTGGCTGATGTGGAGCTTGTGATGGATGTAAGCAGGAGGGACTTTCTCCCTTCCCCCAAAGTTGATTCTTCTGTGGTCATAATCCGCCCTAAGCCTCAGGTTCCCAATGTCGATCTCCGTGAGTGGAGGGCTTTCACCTCGAGTTGTTTCAATAACCGTAACAAGACACTAGGGGCATCTTTCAAGAACAAGAGGAAAGTCTTTGAGTTGCTCAAAATCTCCAATGAAAACGATAAAGCTTCTTCCCACAAGGGTGATGATGTTGAAGATGAAGGAGGCTTTACCTCGTTCAAGGAAAAGATTATTGGGGTGCTTAGAACGGGAGAGTTTGAAGATAAAAGGCCTGCAAAACTTTCTATCGAGGAGCTTCTGCGTTTGCTCTCTTTGTTCAATCAAGCTGGCATTTATTTTGGATACCGTGGACATTTCAAGAGGGAAGATAGGTTTGATGCCGATGACGAATAG 1233 0.4631 MLLLSVIEKDNTKQHIRQSLVPIIRINIEKQRACNDTKDKKMTPMLLHDQLKHKAIIDVGRLMKHVDEGGTMLGATRRVVGFIPRRLRPVRQVHGDEDGEERLHFHKSKGQHILINPRILDTIVRKSAINPTDTVLEIGPGTGNLTLKLLEAAHKVVAFEIDHRLVQVLEKRALHRGLKDKLRVIERDAMKAPFPRFDLVVANIPYQISSPLVIKLVYGSTPFRSATLLLQKEFARRLVANPGDSEFSRLSVNVKLLADVELVMDVSRRDFLPSPKVDSSVVIIRPKPQVPNVDLREWRAFTSSCFNNRNKTLGASFKNKRKVFELLKISNENDKASSHKGDDVEDEGGFTSFKEKIIGVLRTGEFEDKRPAKLSIEELLRLLSLFNQAGIYFGYRGHFKREDRFDADDE 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00912 410 PANTHER DIMETHYLADENOSINE TRANSFERASE 101 388 IPR001737 -
Phco4g00912 410 NCBIfam 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA 105 384 IPR011530 GO:0000179|GO:0006364
Phco4g00912 410 Hamap Ribosomal RNA small subunit methyltransferase A [rsmA]. 103 387 IPR011530 GO:0000179|GO:0006364
Phco4g00912 410 Gene3D Vaccinia Virus protein VP39 105 289 IPR029063 -
Phco4g00912 410 CDD AdoMet_MTases 134 213 - -
Phco4g00912 410 Pfam Ribosomal RNA adenine dimethylase 104 331 IPR001737 -
Phco4g00912 410 Gene3D - 291 394 - -
Phco4g00912 410 FunFam rRNA adenine N(6)-methyltransferase 105 289 - -
Phco4g00912 410 ProSiteProfiles rRNA adenine N(6)-methyltransferase family profile. 105 390 IPR001737 -
Phco4g00912 410 SMART rADcneu6 119 288 IPR020598 GO:0000154|GO:0000179|GO:0008649
Phco4g00912 410 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 102 388 IPR029063 -
Phco4g00912 410 ProSitePatterns Ribosomal RNA adenine dimethylases signature. 135 162 IPR020596 GO:0000154|GO:0000179|GO:0008649
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00912 Phco-Chr4 7231890 7234181 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00912 4 7231890 7234181 Phco4g00912 4 7231890 7234181 ECH