Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00910 ATGGTTTTTGATGATGGCGAAAAATACAAATTTAAGTGTTTTTGTGACCGCAAGGATCCTATCCGCCACCATAACAGGGCGAATTTAATTCAGAACCCAACTGAGAGTGAGAGTGAGAGAGAGAGAGACATGGCTTCCTCACTGTCCTCCGTCATCAACCAACCTCACATTGCTCAACGCTTCAAACTTCACCGTCCATCTTCTTTTGCCACTTTCACAATCTTCCACCACAAACGCAAACACAAACACCAATACAATGTGTTTTCTCCACACCCTTATACCTCATCGCCACGCTCTCGCCCTCTCAATCTCATAATCGCTTCCAGAACCTTCTCTCATTCCAACACTCTCCGCCACCACTTGATCCCTCAAGCCACGCTCACTGCTTCCGAAGCTCAACCCCGCCTTGTGCCAGATGCTGAAGTTCCTCCCACTGGTCGAATATATCATGAGACTTATGGATGTCAAATGAATGTTAATGATATGGAGATCGTTCTTTCTATAATGAAAAAAGCCGGTTACAGTGAAGTTGTGAGTGTTCCCGAGAGTGCAGAAATTATATTTATCAATACCTGTGCCATTAGAGAAAACGCAGAACAGAAAGTATGGCAGAGGCTTAATTACTTTTGGTTTCTTAAGAGGCATTGGAAGAGCAATGTTGCTACTGGAAGAGCACAGTCTCTGTGCCCTCCCAAAGTAGTGGTTTTGGGATGTATGGCTGAGAGGTTAAAGGAGAAGATACTTGATTCAGACAAAATGGTTGATGTGGTATGCGGGCCTGATGCTTATAGGGATTTGCCAAGCTTACTGGAGGAGGTTGACTATGGTCAAAAAGGGATCAATACTCTCCTTTCACTTGAGGAGACTTATGCTGATATTAATCCTGTTAGAATCTCCAAGAACTCGGTTACTGCATTTGTCTCAGTGATGAGAGGTTGCAATAATATGTGCTCGTTTTGTATTGTTCCTTTCACCAGAGGTAGAGAGCGATCGCGTCCGGTGGAGTCAATTGTGAGAGAGGTAGCTGAGCTTTGGAAAGAGGGTGTTAAGGAGGTAACGCTTCTTGGCCAGAATGTAAACAGCTACAACGATGCAGCTGGGAGTGAGAGTGAGGTTGAATCAGGGTCCAATTGGCAACTTAGTGAAGGGTTTTCTAGTATGGCTAAGGTAAAAAAAATGGGCTTGAGATTTTCTGATCTACTGGATCGATTGTCCTCAGAATTTCCTGAGATGCGATTCAGATTCACTTCTCCACACCCTAAGGATTTTCCAGATGAGTTGCTTTATCTAATGCGAGACAGACATAATATATGCAAGCTGATACATTTACCTGCTCAAACTGGAAGTAGCAAAGTGCTGGAGAGAATGAGAAGAGGATATACCCGAGAGGCTTACTTGGAACTTGTGCAAAAGATCCGGAGTATTATTCCTGATGTGGCTTTGAGCAGTGATTTCATTTGTGGATTTTGTGGAGAAACAGAGGAGGAACATTCTGAGACGTTGACTCTGGTAAATGCCGTTTGTTATGATATGGCATTCATGTTTGCTTATAGCATGAGGGAGAAAACTCATGCCCACAGAAATTATGTTGACGATGTTCCTGAGGAAATTAAACAGAGGAGGCTGGCTGAACTTATTGAGACTTTCCGAGGGAGTACGGGGAAGTGTTTTGACTCTCAGATTGGAACCACACAGCTTGTTTTAGTGGAAGGACCCAATAGAAGAGCTCCAGATACTGAGCTTATGGGCAAGAGTGACAAGGGCCATCGCGTGTTGTTCATCAATATGCCAATCGCAGACAGGGAAGATGTTGATACAAAGCGAAATCCTGTGGTTGGTGATTATGTTGAAGTTCACATAACAAGATCTACGAGGGCATCACTCTTTGGTGAAGCACTTGCTATAACTAAACTGACCTCATTTTACTATAATCTGAATAAAGAAGCTGTTGCATGCAGCATGTAG 1965 0.4351 MVFDDGEKYKFKCFCDRKDPIRHHNRANLIQNPTESESERERDMASSLSSVINQPHIAQRFKLHRPSSFATFTIFHHKRKHKHQYNVFSPHPYTSSPRSRPLNLIIASRTFSHSNTLRHHLIPQATLTASEAQPRLVPDAEVPPTGRIYHETYGCQMNVNDMEIVLSIMKKAGYSEVVSVPESAEIIFINTCAIRENAEQKVWQRLNYFWFLKRHWKSNVATGRAQSLCPPKVVVLGCMAERLKEKILDSDKMVDVVCGPDAYRDLPSLLEEVDYGQKGINTLLSLEETYADINPVRISKNSVTAFVSVMRGCNNMCSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVTLLGQNVNSYNDAAGSESEVESGSNWQLSEGFSSMAKVKKMGLRFSDLLDRLSSEFPEMRFRFTSPHPKDFPDELLYLMRDRHNICKLIHLPAQTGSSKVLERMRRGYTREAYLELVQKIRSIIPDVALSSDFICGFCGETEEEHSETLTLVNAVCYDMAFMFAYSMREKTHAHRNYVDDVPEEIKQRRLAELIETFRGSTGKCFDSQIGTTQLVLVEGPNRRAPDTELMGKSDKGHRVLFINMPIADREDVDTKRNPVVGDYVEVHITRSTRASLFGEALAITKLTSFYYNLNKEAVACSM 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00910 654 FunFam CDK5 regulatory subunit-associated protein 1 301 560 - -
Phco4g00910 654 Gene3D tm_1862 like domain 301 557 IPR023404 -
Phco4g00910 654 ProSiteProfiles TRAM domain profile. 558 634 IPR002792 -
Phco4g00910 654 FunFam CDK5 regulatory subunit-associated protein 1 146 289 - -
Phco4g00910 654 SFLD Radical SAM 147 638 IPR007197 GO:0003824|GO:0051536
Phco4g00910 654 Gene3D - 147 289 IPR038135 -
Phco4g00910 654 NCBIfam MiaB/RimO family radical SAM methylthiotransferase 147 628 IPR005839 GO:0006400|GO:0016740|GO:0051539
Phco4g00910 654 PANTHER CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 1 91 646 - -
Phco4g00910 654 ProSitePatterns Methylthiotransferase radical SAM domain signature. 307 327 IPR020612 GO:0051539
Phco4g00910 654 CDD Radical_SAM 311 547 - -
Phco4g00910 654 SFLD (dimethylallyl)adenosine tRNA methylthiotransferase (MiaB-like) 146 634 IPR006463 GO:0006400|GO:0016740|GO:0051539
Phco4g00910 654 ProSiteProfiles Methylthiotransferase N-terminal domain profile. 146 275 IPR013848 GO:0035596|GO:0051539
Phco4g00910 654 MobiDBLite consensus disorder prediction 26 46 - -
Phco4g00910 654 SFLD CDK5RAP1 147 638 - -
Phco4g00910 654 Pfam Radical SAM superfamily 307 503 IPR007197 GO:0003824|GO:0051536
Phco4g00910 654 SFLD methylthiotransferase 146 634 IPR005839 GO:0006400|GO:0016740|GO:0051539
Phco4g00910 654 NCBIfam tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB 148 631 - -
Phco4g00910 654 ProSiteProfiles Radical SAM core domain profile. 299 555 IPR007197 GO:0003824|GO:0051536
Phco4g00910 654 Pfam TRAM domain 558 633 IPR002792 -
Phco4g00910 654 Pfam Uncharacterized protein family UPF0004 147 259 IPR013848 GO:0035596|GO:0051539
Phco4g00910 654 SFLD B12-binding domain containing 226 508 - -
Phco4g00910 654 SUPERFAMILY Radical SAM enzymes 297 551 - -
Phco4g00910 654 SMART MiaB 303 544 IPR006638 GO:0003824|GO:0051536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00910 4 7204982 7209811 Phco4g00910 4 7204982 7209811 ECH