Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00848 ATGACTTTAGTTTCAGAGTGTTTCTGTGTTTTTCTCCTGCTTTATTTATGTGGCTCCGTAGTTTGTGTCAAATATAATACTGGAGCAAGCATTGTGCCAGGCAAACTGAATGTTCATCTCGTTGCTCATTCCCATGACGATGTTGGCTGGCTCAAGACCGTTGATCAATACTATGTTGGGTCCAACAATAGTATTCAGGGGGCATGTGTGGAGAATGTGCTGGATTCGGTGGTTATGTCCCTGCAGCGTGACCAAAACAGAAAGTTTGTATTTGCTGAAATGGCATTTTTCAGTAGATGGTGGGTGGAACAAACTCCGCAAATACAAGCGCAGGTGACAAAGCTTGTGAATGCTGGCCAGCTAGAATTTGTAAATGGTGGTTGGTGCATGCATGATGAAGCAGCTACTCACTACGTAGACATGATTGATCAAACCACTCTGGGTCACCGCTTCATCAAAAACCAATTCAACAAGACCCCTCGTGCAGGGTGGCAGATTGATCCCTTTGGACACTCTGCTGTTCAAGCTTACTTGCTTGGTGCTGAGCTTGGTTTTGACTCTGTGCACTTCGCTAGGATCGATTATCAGGACAGAGATAAACGCAAAGTTGATAAAACTCTTGAAGTTGTTTGGCGTGGCTCCAAGTCATTTGGCTCTTCAGCCCAGATTTTTGCCAACACTTTTCCTGTTCATTATGGTCCACCGAGCGGATTTCATTTTGAAGTCAATGATAACCTTGTTCCCGTACAGGATGACCCCCTTCTATTTGATTACAATGTCGAACAGCGAGTCCAGGACTTCGTCGCTGCTGCTATTACACAAGCAAATGTGACAAGGACGAACCATATCATGTGGACAATGGGCGATGATTTCCAGTACCAATATGCAGAGAATTGGTTCAGGCAAATGGATAAACTAATTCACCATGTTAACAAGGATGGCAGAGTGAATGCTTTATATTCTACCCCATCCATTTACACGGATGCAAAAAATGCTGCAAATCAACAATGGCCACTGAAAATTGATGATTACTTCCCGTATGCAGATGAACCTCATGCTTATTGGACAGGCTTTTACACCAGTCGCCCAGCCTTTAAGCGATATGTTAGGATCCTTAGTGGATACTATTTGGCAGCACGCCAACTTGAATTTTTTGCCGGAAAGAAATCCACTGCAAGCCACACTTTAGACCTTGGAGATGCTCTGGGTATTGCACAGCATCATGATGCTGTCTCTGGCACTGCCAAACAACATACAACTGATGACTATGCAAAACGACTTGCCATTGAAGCCTCAAGGGTTGAGGATGTTGTTAGTTCCTCTTTGTATTGTCTTACTAGAACGAAATTAGGGGGTCAATGCACAGCACCTACATCGGCATTTTCCCAGTGTCAATTACTCAACATCAGTTACTGTCCAGCAACAGAAGGCAGTATTCCACAAGCGAATAGTTTGGTATTAGTGGTGTATAACACACTTGGATGGAATCGTACAGACATTGTCAGAATTCCAGTTAATGACGCTAATCTTGTTGTCAAAGATTCATTGGGAAATAATGTTCAAACACAGTACATAGAAGTGGATAGTGTTACAGCAAATTTGAGAGAAATCTACGTCAAAGCCTATCTTGGGGTGTCACCAAAACAAACCCCCAAGTACTGGCTTGTGTTTCAGGCTTCAGTACCCCCACTTGGATGGAGTACGTATTTCATTTCTAAAAAGGCAATGAAAGTTGAAAGCCGAAATGGATTTGTTTCACACCACACCACCAGTCAGAGAAACAATATCATTGAAGTAGGACCTGGAAATTTGAAGCTGTCCTTTTCTGCAGAGTCTGGACAACTCATACGCATGCATAATTCCAGAACTGGAGTAGATGTACCAATTCAGCAAAGCTATCTCTGGTATAGTTCTTCGGTAAGTGTAGGTCTGCTTTCTGGCGCATATATTTTTCGGCCCGATTCCCCTCCAAAAATTGTTTCAAAATCAGTGCCCATCAAGATAATCCGCGGACCATTAGTAGATGAGGTTCATCAGAATTTTAGTTCTTGGATTTACCAGATTACTAGGGTTTACAAAGACAAAGAGCATGCTGAGATTGAATACACTATTGGTCCAATTCCTATGGGGTTTGGCGATGGGAAAGACGTAATCACACAATTGACAACCAATATGCTGACAAACAAAGAGTTTTATACTGATTCTAATGGAAGAGATTTTTTGAAACGGGTACGAGATTATAGGGAAGATTGGCCCCTGAAAGTTACAGAGCCAGTAGCAGGCAACTACTATCCACTCAATCTTGGAATTTATATTAAGGACAATAAATCTGAATTATCAATCTTAGTTGATCGGGCCACTGGAGGAGGCAGTATAAAAGATGGTCAGGTGGAACTTATGCTTCATAGGAGAATGCAGTCTGATGATGGCAGAGGAGTAGGCGAAAGTCTTAATGAACAAGTGTGCCAAAATAATAAATGTGAAGGACTAACAGTAAGAGGAAATTATCATGTGGCCATCCACAACCTTACAGCTGGTTCACGGTGGCGCCGTACAACTGGTCAGGAAATTTATTCACCATTATTATTGGCGTTTTCACAAGAAAAAATGGGAAATTGGAAGGCCTCTCATGTGACCAAAGGAACTCTCATTGACCCCAATTACAGCTTACCTCCTAATGTAGCTCTTATAACTCTCGAGGAGCTGGAAAATGGAATGGTGCTTCTCCGTTTGACACATCTATATGAGTCTGGTGAAGATGCTCAGCTTTCAACTTTAACCAAAGTTGAATTGAAGAAAATGTTTATCACAAAAACGATAAAGCAGTTGACTGAGGTTAGTTTATCAGCTAATCAAGAGAGGTCAAAAATGAAGAAGAAAACATGGAAGGTTGAAGGGGACAAGGGACAAGAATCAAAAGCAGTTAGGGGTGGCCCTGTTAGCCAAATCAGTCTTGTAGTTGAGCTTGGTCCAATGGAAATTCGCACTTTCCTACTGGAATTCTAA 3006 0.4212 MTLVSECFCVFLLLYLCGSVVCVKYNTGASIVPGKLNVHLVAHSHDDVGWLKTVDQYYVGSNNSIQGACVENVLDSVVMSLQRDQNRKFVFAEMAFFSRWWVEQTPQIQAQVTKLVNAGQLEFVNGGWCMHDEAATHYVDMIDQTTLGHRFIKNQFNKTPRAGWQIDPFGHSAVQAYLLGAELGFDSVHFARIDYQDRDKRKVDKTLEVVWRGSKSFGSSAQIFANTFPVHYGPPSGFHFEVNDNLVPVQDDPLLFDYNVEQRVQDFVAAAITQANVTRTNHIMWTMGDDFQYQYAENWFRQMDKLIHHVNKDGRVNALYSTPSIYTDAKNAANQQWPLKIDDYFPYADEPHAYWTGFYTSRPAFKRYVRILSGYYLAARQLEFFAGKKSTASHTLDLGDALGIAQHHDAVSGTAKQHTTDDYAKRLAIEASRVEDVVSSSLYCLTRTKLGGQCTAPTSAFSQCQLLNISYCPATEGSIPQANSLVLVVYNTLGWNRTDIVRIPVNDANLVVKDSLGNNVQTQYIEVDSVTANLREIYVKAYLGVSPKQTPKYWLVFQASVPPLGWSTYFISKKAMKVESRNGFVSHHTTSQRNNIIEVGPGNLKLSFSAESGQLIRMHNSRTGVDVPIQQSYLWYSSSVSVGLLSGAYIFRPDSPPKIVSKSVPIKIIRGPLVDEVHQNFSSWIYQITRVYKDKEHAEIEYTIGPIPMGFGDGKDVITQLTTNMLTNKEFYTDSNGRDFLKRVRDYREDWPLKVTEPVAGNYYPLNLGIYIKDNKSELSILVDRATGGGSIKDGQVELMLHRRMQSDDGRGVGESLNEQVCQNNKCEGLTVRGNYHVAIHNLTAGSRWRRTTGQEIYSPLLLAFSQEKMGNWKASHVTKGTLIDPNYSLPPNVALITLEELENGMVLLRLTHLYESGEDAQLSTLTKVELKKMFITKTIKQLTEVSLSANQERSKMKKKTWKVEGDKGQESKAVRGGPVSQISLVVELGPMEIRTFLLEF 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00848 1001 Gene3D Glycoside hydrolase family 38, central domain 396 450 IPR037094 GO:0004559|GO:0006013
Phco4g00848 1001 Pfam Glycosyl hydrolases family 38 C-terminal domain 601 811 IPR011682 GO:0004559|GO:0006013
Phco4g00848 1001 Gene3D Glycoside hydrolase family 38, central domain 317 395 IPR037094 GO:0004559|GO:0006013
Phco4g00848 1001 Gene3D - 463 575 IPR013780 -
Phco4g00848 1001 SMART Alpha_mann_mid_2 353 427 IPR015341 GO:0004559|GO:0006013
Phco4g00848 1001 FunFam Alpha-mannosidase 396 450 - -
Phco4g00848 1001 Pfam Alpha mannosidase middle domain 353 444 IPR015341 GO:0004559|GO:0006013
Phco4g00848 1001 FunFam Alpha-mannosidase 463 574 - -
Phco4g00848 1001 SUPERFAMILY Galactose mutarotase-like 459 1001 IPR011013 GO:0003824|GO:0005975|GO:0030246
Phco4g00848 1001 Gene3D - 884 1001 - -
Phco4g00848 1001 Gene3D Glycoside hydrolase 38, N terminal domain 36 316 IPR027291 -
Phco4g00848 1001 FunFam Alpha-mannosidase 36 316 - -
Phco4g00848 1001 Pfam Glycosyl hydrolases family 38 C-terminal beta sandwich domain 893 998 IPR041147 -
Phco4g00848 1001 SUPERFAMILY Families 57/38 glycoside transferase middle domain 352 447 IPR028995 -
Phco4g00848 1001 FunFam Alpha-mannosidase 315 395 - -
Phco4g00848 1001 FunFam Alpha-mannosidase 879 1001 - -
Phco4g00848 1001 Gene3D - 597 859 - -
Phco4g00848 1001 Pfam Glycosyl hydrolases family 38 N-terminal domain 37 348 IPR000602 GO:0004559|GO:0006013
Phco4g00848 1001 PANTHER ALPHA-MANNOSIDASE 17 1001 - -
Phco4g00848 1001 CDD GH38N_AMII_LAM_like 36 312 - -
Phco4g00848 1001 SUPERFAMILY Glycoside hydrolase/deacetylase 25 351 IPR011330 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00848 Phco-Chr4 6553040 6561054 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00848 4 6553040 6561054 Phco4g00848 4 6553040 6561054 ECH