Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00838 ATGATGTTAGACGGAACGGAAGATGAAGAGAAGTTTCTCGCTGCCGGAATCGCCGGTCTTCAGCAGAACTCCTTCTACATGCACCGTGCATTGGATTCCAACAATCTCCGGGATGCTTTGAAGTATTCGGCTCAGATGCTCTCCGAGCTCAGGACTTCCAAGCTTTCTCCTCACAAGTACTACGAACTATATATGCGCGCCTTTGATCAGTTACGGAAGCTTGAGATGTTCTTCGAGGAAGAGGCTCGTCGCGGTTGCTCCATTATTGATCTTTATGAACTCGTCCAGCATGCCGGAAACATTTTGCCTCGATTGTATCTCCTCTGTACAGTAGGATCAGTATACATCAAGTCCAAGGAAGCTCCTGCAAAGGATGTTCTTAAGGATCTTGTGGAGATGTGTCGTGGCATTCAGCACCCTGTTCGTGGACTATTTCTAAGAAGTTACCTTTCTCAAGTTAGTAGGGATAAATTGCCAGATATTGGTTCAGAATACGAAGGGGATGCGGATACTGTAGCAGATGCTGTAGAATTTGTACTGCAAAATTTCACTGAAATGAACAAACTTTGGGTGCGGATGCAACATCAGGGGCCTGCCCGAGAGAAGGAGAAACGAGAAAAGGAAAGGAGCGAGTTGCGTGATCTTGTTGGGAAGAATCTTCATGTTCTCAGTCAGATAGAGGGTGTAGACCTAGATATGTACAAAGATGTTGTGCTTCCTAGAGTACTGGAGCAGGTTGTGAATTGTAAAGATGAGTTGGCTCAGTTCTACTTGATGGATTGCATAATTCAAGTATTCCCTGATGAATATCACTTGCAAACTCTTGATGTGTTGTTGGGTGCTTATCCTCAACTTCAGCCGTCAGTTGACATCAAGACAGTGCTGTCTCAGTTAATGGAAAGGCTTTCGAATTATGCCGCTTCAAGTGCAGAGGTGTTGCCAGAGTTTTTGCAAGTGGAAGCATTTTCCAAATTAAGCAATGCCATTGGCAAGGTGATAGAGGCACAACCTGACATGCCCACTGTTGGAGTTGTAACTTTGTATTCATCACTTCTCACCTTCACGCTCCATGTCCACCCTGATCGACTTGATTATGCAGATCAAGTCTTGGGAGCATGTGTGAAAAAACTATCTGGCAAAGGGAAAATTGAGGACAACAAGGCAACTAAGCAGATCGTTGCTCTATTAAGTGCTCCACTAGAGAAATATAATGATATTATGACTGCATTGAAGCTTTCAAATTATCCTCGTGTGATGGAATACCTTGATGTTCCAACTACTAAGGTCATGGCAACTGTTATTATTCAAAGCATTATGAAAAATGGAACACACATTTCTACATCAGAGAAGGTTGACGCATTGTTTGAACTGATAAAGGGGCTCATCAAGGATTCTGATGGGGTTTCTAAAGATGAGCTCGATGAAGATGATTTCAAAGAGGAGCAGAATTCTGTTGCCCGTCTGATCCAGATGCTTTATAATGAGGATCCAGAAGAAATGTTTAAGATCATTGATACTGTGAGGAAGCACATACTGACTGGAGGACCAACGCGTCTGCCTTTCACTGTCCCACCTCTTGTTTTTTCTTCTTTAAAGTTGGTCAGACAGTTGCAAGGTCAAGAAGAAAATCCATTTGGAGATGATGCCTCAACAACACCAAAGAAAATTTTTCAGCTTTTAAATCAGACCATCGAGACCTTATCAGGTGTCCTGGCACAAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAGGCTGCAAATGACTGTGATTTGGAACCTGTTGCTTATGAATTTTTCACCCAAGCTTATATTCTATACGAAGAAGAAATTTCTGACTCCAGGGCACAGGTCACAGCTATCCATTTAATAATAGGGACTCTTCAAAGGATGCATGTCTTTGGTGTTGAAAACAGAGATACTTTAACTCATAAGGCCACAGGGTATTCTGCAAAGCTGTTGAAGAAGCCGGATCAATGCAGAGCTGTATATGCATGCTCACATCTGTTTTGGGTTGATGATCATGATAACATGAAAGATGGAGAGAGGGTCCTATTATGTCTCAAACGGGCTTTACGAATTGCAAATGCTGCCCAACAAATGGCAAATGCAGCGCGAGGTAACGCGGGATCAGTAATGCTCTTCATTGAGATATTAAACAAGTATCTTTACTTCTTTGAGAAGGGAAACCTACAAGTCACCGTTGCTGCTATCCAGGGCTTAATTGAGTTAATTATGAATGAAATGCAAAGTGATGCCACGACTTCAGATCCAGCTGCCGATGCTTTCTTAGCCAGTACTATGCGATATATAGAGTTCCAGAAACAAAAAGGTGGTACCGTAGGCGAGAAATATGAAGCCCTCAAGGTTTCACACGCAGGATGA 2385 0.4277 MMLDGTEDEEKFLAAGIAGLQQNSFYMHRALDSNNLRDALKYSAQMLSELRTSKLSPHKYYELYMRAFDQLRKLEMFFEEEARRGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKDVLKDLVEMCRGIQHPVRGLFLRSYLSQVSRDKLPDIGSEYEGDADTVADAVEFVLQNFTEMNKLWVRMQHQGPAREKEKREKERSELRDLVGKNLHVLSQIEGVDLDMYKDVVLPRVLEQVVNCKDELAQFYLMDCIIQVFPDEYHLQTLDVLLGAYPQLQPSVDIKTVLSQLMERLSNYAASSAEVLPEFLQVEAFSKLSNAIGKVIEAQPDMPTVGVVTLYSSLLTFTLHVHPDRLDYADQVLGACVKKLSGKGKIEDNKATKQIVALLSAPLEKYNDIMTALKLSNYPRVMEYLDVPTTKVMATVIIQSIMKNGTHISTSEKVDALFELIKGLIKDSDGVSKDELDEDDFKEEQNSVARLIQMLYNEDPEEMFKIIDTVRKHILTGGPTRLPFTVPPLVFSSLKLVRQLQGQEENPFGDDASTTPKKIFQLLNQTIETLSGVLAQELALQLYLQCAEAANDCDLEPVAYEFFTQAYILYEEEISDSRAQVTAIHLIIGTLQRMHVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDHDNMKDGERVLLCLKRALRIANAAQQMANAARGNAGSVMLFIEILNKYLYFFEKGNLQVTVAAIQGLIELIMNEMQSDATTSDPAADAFLASTMRYIEFQKQKGGTVGEKYEALKVSHAG 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00838 794 PIRSF Retromer_Vps35 2 793 IPR005378 GO:0015031|GO:0030906|GO:0042147
Phco4g00838 794 Gene3D - 465 775 IPR042491 -
Phco4g00838 794 PANTHER VACUOLAR SORTING PROTEIN 35 6 789 IPR005378 GO:0015031|GO:0030906|GO:0042147
Phco4g00838 794 FunFam Vacuolar protein sorting-associated protein 35 466 775 - -
Phco4g00838 794 SUPERFAMILY ARM repeat 210 749 IPR016024 -
Phco4g00838 794 Pfam Vacuolar protein sorting-associated protein 35 13 747 IPR005378 GO:0015031|GO:0030906|GO:0042147
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00838 Phco-Chr4 6482086 6492392 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00838 4 6482086 6492392 Phco4g00838 4 6482086 6492392 ECH