Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00780 ATGGCGGTTACTTTCAGAATGATCCACAACAAACATGGCGTGCTTGCTCGTTTGAAGACTCTCGTCAACTCTCAGAACTTTCACTCCGTTGATCCCAAACTGGCCAAACAACCAAAGCAAGACAGTCCGTCTCCAAAAGAAGAGTTGGACTACTCTATTTGCCGAGATCGCATAGGCATCTCAAAATGGAAGACTTTGGATGCAGAGGAGCTTGGTGTAACTAGTTCTATGATTTCACATTCATCTATGTTTGTCCTGAAACTTCTTCGGAGCAAAGGATTTGAGTCCTACTTTGTAGGTGGGTGCGTGAGAGATCTAATACTGAATAGAACTCCAAAAGATTTTGATGTCATCACCACAGCAAAGCTTATGCAGGTGAGAAAGCAGCTTCGTCGTTCAGTTCATGCTGAAGTTGTTGGACGTCGTTTTCCAGTATGCTTGGTTCATATAAAAGGTTCTGTAGTTGAGGTAACTAGTTTTGAGACAGTGGCACAAACTTCCAATGGGAAGGAACAATTTTTGTACTCTCTGTTGCCCAAATGCAGTAATAAAAAAGACTTGTTTCGCTGCAAAAACTCCTTGCTCAGAGACTTTACAATTAATAGTTTATTTTATGACCCCTTTGCCAATAAAATCTACGATTATACCAATGGAATGGCAGATTTGAAGACCTTAAAGCTAGAAACTGTTATCCCTGCACAGCTGTCCTTCAAAGAGGATCCTGGAAGAATTTTGCGTGGCTTCAGAATTACAGCTCGGCTAGGTTTATCAATATCAAGGGAGATTGAGGCTGCAATCTGGACATATTCTTCACTGGTTAAGACCTTGGACAAGAATAAAATTATGATTGAATTGAAGTATATGCTGTCTTATGGAGCTGCTGAACCATCTCTGCGTCTACTTTGGAAATTCAAATTGCTTGAATTTTTACTTCCTGTACATGCAGCATATCTAGATGAACAGGCTATTGAAGAAGATGCTCAGGCTTCCAATATGTTGTTAAAGTTATTCTTCCATCTGGATAAGTTGGTTGCATGCGATCGACCTTGTGATTGCACTCTGTGGATTGGATTGCTTGCCTTTCACCTGGCATTAGTAAATAATCCTCAAGATGCTATAGTGGTGTGGGCTTTTGCATCTGTTCTATATCATGGAGAGTGGAAAGAAGGTGTTAAATTTGCTAAAGAACAAGCCAGAATGAGTGTTAATTTTGTACCTGAAATAAGAAAATCTAATTTATACAAATCAGATGAAGAAATTGCAATAGCAGTTACTAAATTGGCATCTTTAGTGATACACTCGATATCTGCATTGGTTGAGAAAAATAGTCTTTGTCAGTTCATGAGCATTTCTAGATACCCATCTTTTCCACAATCTGGCATGGTATTTGTATCCAGGAAAGCAGGGAATCTTGCTCATGCAATTTTCAAAATGCTGGCCAGTGATGGTAAATTGTACAAGAGTGGGAGAAGAACGAATTTGAAGATAAATTATGACATGCTTGGGAAGGGTCAACTTTCAGAGACTGGATTTGTTTTGGGCAAAATTGTTCTTGAAACTATGAGTAGTGGAATTGTTGGGGATGGGGAGGATTCTGAAGCTGGACAATGTCACCTAAAGACTAAGGGCACTGAAGAAATTGGTCCATCGCAACATCCAGATCTGGTAAACCATCAAGTGGCGTTAATGGATGGTGAAGGACAACTTTTATCAATACCAAATTCAGAATGTGGGCAAGGAAAAAACAAGAAACGGAAACTGGTTGAGAATAGGTGTATTGCAAGGAAGAAAATGGGCTCAGGGAACCATGAATTGTCTGAGAAATTTAAATGCAAGGAAAATAAAAAAGAGCAGCAGAAGCTAGTTAAGATAAGCCAGAAGGTTGATCAGTCCATGAAGAAGGACTCCGCAAAAAAGAAAATTGATCACAGAAAACAGCTGATAAATGATAAGAAGAAAATAACCAGTGCCAATACACGTTCTCTAGACCAAGATGTGCTAATGAAGACGGATGAACACAGCACATGTACGGCATCACAATCTGCAGTATCTGATAATCATCGGGTGACAGCTTACAACTTGGACATGGATGCAAAAACAACAAATAACAACTTGGACGTGGATGCAAAAACACCAAATGAGTCAGACATGAAGAAGAAGAAAATGCGTGTATCACTGGTTGAACTCTTTAAGTGA 2196 0.3953 MAVTFRMIHNKHGVLARLKTLVNSQNFHSVDPKLAKQPKQDSPSPKEELDYSICRDRIGISKWKTLDAEELGVTSSMISHSSMFVLKLLRSKGFESYFVGGCVRDLILNRTPKDFDVITTAKLMQVRKQLRRSVHAEVVGRRFPVCLVHIKGSVVEVTSFETVAQTSNGKEQFLYSLLPKCSNKKDLFRCKNSLLRDFTINSLFYDPFANKIYDYTNGMADLKTLKLETVIPAQLSFKEDPGRILRGFRITARLGLSISREIEAAIWTYSSLVKTLDKNKIMIELKYMLSYGAAEPSLRLLWKFKLLEFLLPVHAAYLDEQAIEEDAQASNMLLKLFFHLDKLVACDRPCDCTLWIGLLAFHLALVNNPQDAIVVWAFASVLYHGEWKEGVKFAKEQARMSVNFVPEIRKSNLYKSDEEIAIAVTKLASLVIHSISALVEKNSLCQFMSISRYPSFPQSGMVFVSRKAGNLAHAIFKMLASDGKLYKSGRRTNLKINYDMLGKGQLSETGFVLGKIVLETMSSGIVGDGEDSEAGQCHLKTKGTEEIGPSQHPDLVNHQVALMDGEGQLLSIPNSECGQGKNKKRKLVENRCIARKKMGSGNHELSEKFKCKENKKEQQKLVKISQKVDQSMKKDSAKKKIDHRKQLINDKKKITSANTRSLDQDVLMKTDEHSTCTASQSAVSDNHRVTAYNLDMDAKTTNNNLDVDAKTPNESDMKKKKMRVSLVELFK 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00780 731 Gene3D Beta Polymerase, domain 2 63 224 IPR043519 -
Phco4g00780 731 Pfam Poly A polymerase head domain 97 226 IPR002646 GO:0003723|GO:0006396|GO:0016779
Phco4g00780 731 SUPERFAMILY Poly A polymerase C-terminal region-like 227 378 - -
Phco4g00780 731 SUPERFAMILY Nucleotidyltransferase 72 223 IPR043519 -
Phco4g00780 731 PANTHER POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN 28 538 - -
Phco4g00780 731 CDD NT_ClassII-CCAase 87 223 IPR002646 GO:0003723|GO:0006396|GO:0016779
Phco4g00780 731 Gene3D - 227 443 - -
Phco4g00780 731 Pfam Probable RNA and SrmB- binding site of polymerase A 255 317 IPR032828 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00780 Phco-Chr4 5999960 6006943 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00780 4 5999960 6006943 Phco4g00780 4 5999960 6006943 ECH