Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00768 ATGAGCGAATCCCAAGACCTCTCCTACCCTCCTATAGACCCCGTCAACTTCGATCTCATCATCGTCGGCACCGGCCTATCTGAATCCGTCATCGCCGCCGCCGCATCCGCCGCCGGCAAAACTATCCTCCACCTCGACCCCAACTCCTTCTACGGTAGCCACTTCGCCTCTCTCTCCTTCCTCCACCTTACTTCCTACCTCACCTCCCCCAGTCCGCTCCCCGCCGTCGTCACAACCACCGATTCCGAGGACGTCGTTGTCGATCTCCTCCAACAACCTCTCTGCTCCGATGCGGAAATCACATCCTACAATGAATACTCATTCCTCTGCGAAAATTCGAGAAAATTCAACATCGATTTGGGAGGTCCGAGGGCGCTGTTCAGCGCGGACAAGACGATCGATCTGCTGCTGAAATCGGGCGCGGCGCAGTATTTGGAGTTCAAAGGAATCGATGAATGCTTCGTATACGAAGCAAATGAGGGTTTGGCGAACGTGCCAGATTCTCGCGGAGCAATTTTCAGAGACAAGAAGCTTTCGCTGAAGGAGAAGAACCAGTTGATGAGGTTCTTCAAGCTGGTTCAGCAGCACTTGGATGATACTCAGGAGGAGAAAATTTCGGAGGAAGATATGGAGATTCCGTTTGTTAGTTTCTTGGAGAAAATGAAGTTGCCGCCTAAGATAAAATCGATTCTTCTGTATGCTATAGCCATGCTAAATTATGATCAAGACAGTAACGAGGTTTGTAAAGATTTGCTTAAAACAAAAGATGGAATAAATTGTTTAGCTCAATACAGCTCATCTGTTGGAAGGTTTCCTAATGCTCCTGGGGCTTTGCTTTATCCTATTTATGGTGAAGGAGAACTACCACAAGCCTTTTGTCGCCGTGCTGCTGTCAAAGGTTGCATTTATGTTCTAAGAATGCCAGTTGTTTCGCTGCTTATGGATAAGGTTACTGGGCTTTATAAAGGTGTTAGATTAGCTTCAGGTCAAGATTTATATAGCCACCAACTAATTCTGGATCCATCCTTCACGATTCCATCACCGTTGTCTTTGTCTCCAAGAGATTTTCCTTGTGAAAGGCTCCAAATGTTGAGTCAGAGAGATATTAAAGGAATAGTGGCTAGGGGAATATGCATCACAAGAAGTTCAATAAAGCCAGGTGTATCTAATTGCTCAGTGGTGTATCCTCCTAGATCTTTGTATCCCGAACAGATGACGTCAATCAAATCTCTTCAGATAGGATCAAATCTTGCTGTCTGTCCTGAGGGAACCTTTATTTTATATTTTTCCGCATTGTGCAATAATGCCGATGAAGGAAAGAATCTACTAAAAGCAGCCATGAATGCTCTTCTCACACTGCCTGTATCCGGAAACACTATTTCTAGTGTTCAAAGTGACAGTGAAGATACTAAACCGATTGTGCTCTGGAGTGCATTGTATATTCAGAAACTAATTATGAGTAAATTTGAATTGATCAGCTCCACTTCTGCACCGGATGGAAATCTGAACTACAATGACCTTTTAGATGCTGCTGAGAAGCTATTTGGTCAGATGTACCCCAATGAAGAATTCTTTCCAAAGGCAACATCACCCGAAGATCCTACAGATGAGGATGATAATGGGGTGACTCTGGATAGCTAA 1641 0.4485 MSESQDLSYPPIDPVNFDLIIVGTGLSESVIAAAASAAGKTILHLDPNSFYGSHFASLSFLHLTSYLTSPSPLPAVVTTTDSEDVVVDLLQQPLCSDAEITSYNEYSFLCENSRKFNIDLGGPRALFSADKTIDLLLKSGAAQYLEFKGIDECFVYEANEGLANVPDSRGAIFRDKKLSLKEKNQLMRFFKLVQQHLDDTQEEKISEEDMEIPFVSFLEKMKLPPKIKSILLYAIAMLNYDQDSNEVCKDLLKTKDGINCLAQYSSSVGRFPNAPGALLYPIYGEGELPQAFCRRAAVKGCIYVLRMPVVSLLMDKVTGLYKGVRLASGQDLYSHQLILDPSFTIPSPLSLSPRDFPCERLQMLSQRDIKGIVARGICITRSSIKPGVSNCSVVYPPRSLYPEQMTSIKSLQIGSNLAVCPEGTFILYFSALCNNADEGKNLLKAAMNALLTLPVSGNTISSVQSDSEDTKPIVLWSALYIQKLIMSKFELISSTSAPDGNLNYNDLLDAAEKLFGQMYPNEEFFPKATSPEDPTDEDDNGVTLDS 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00768 546 PRINTS Rab GDI/REP protein family signature 36 53 IPR018203 GO:0005092|GO:0007264
Phco4g00768 546 PRINTS Rab GDI/REP protein family signature 132 148 IPR018203 GO:0005092|GO:0007264
Phco4g00768 546 PRINTS Rab GDI/REP protein family signature 284 305 IPR018203 GO:0005092|GO:0007264
Phco4g00768 546 PRINTS Rab GDI/REP protein family signature 182 197 IPR018203 GO:0005092|GO:0007264
Phco4g00768 546 PRINTS Rab GDI/REP protein family signature 18 36 IPR018203 GO:0005092|GO:0007264
Phco4g00768 546 Pfam GDP dissociation inhibitor 112 452 IPR018203 GO:0005092|GO:0007264
Phco4g00768 546 Pfam GDP dissociation inhibitor 16 91 IPR018203 GO:0005092|GO:0007264
Phco4g00768 546 Gene3D - 14 524 IPR036188 -
Phco4g00768 546 SUPERFAMILY FAD-linked reductases, C-terminal domain 370 483 - -
Phco4g00768 546 PANTHER RAB GDP-DISSOCIATION INHIBITOR 13 529 IPR018203 GO:0005092|GO:0007264
Phco4g00768 546 MobiDBLite consensus disorder prediction 523 546 - -
Phco4g00768 546 FunFam Rab proteins geranylgeranyltransferase component A 13 91 - -
Phco4g00768 546 SUPERFAMILY FAD/NAD(P)-binding domain 15 346 IPR036188 -
Phco4g00768 546 PIRSF Rab_ger_ger_transf_A_euk 78 546 IPR001738 GO:0005968|GO:0006886|GO:0018344
Phco4g00768 546 PIRSF Rab_ger_ger_transf_A_euk 1 92 IPR001738 GO:0005968|GO:0006886|GO:0018344
Phco4g00768 546 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 2 93 484 - -
Phco4g00768 546 Gene3D Guanine Nucleotide Dissociation Inhibitor, domain 1 165 277 - -
Phco4g00768 546 FunFam Rab proteins geranylgeranyltransferase component 165 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00768 Phco-Chr4 5918290 5922996 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00768 4 5918290 5922996 Phco4g00768 4 5918290 5922996 ECH