Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00721 ATGGTACTCATCACTGCACCTGTGCCAACACTTACATTACCTACCCACCACCTATTGTTAGACCAAAACCTTGATCTGAAGAACAACAACCCACGTACTTTGTCTTCTCCCAGCCATCAACTCGAGCTTCTACCACCGCTGCGCTACCCCATTCACACCTTCCCACGTCCCCTTATTCCTCAAACAACTACTTTCACCAAGAAGGAGATAAAGAAAAAGAAGAGAAAAGAGGCTACAACCTTAGACATATTGCACTTGATGGACGCTATACCTTTTCCTATACCCATTGACATATACACTTCTTTGATAAAAGAGTGCACTGTTTCCGGCGACCCAGAAACTGCCATCGAGTTGTACACTCACATCTCCAAGAGCGACATCAAACCACCCTTGCCTTTCCTCAATCGGATTCTCATTATGTTCGTGTCCTGTGGTATGTTGGAAAATGCACGCCACATGTTTGACAAAATGCGTGTTAGGGACTTCAACTCTTGGGCAACCTTGTTTGTTGCTTACTATGATAATGCTGAGTATGAGGAGGCCACGGCTGTTTTTGTCAACATGTTAGGTCAATTGGGCATGTTGCAGTTTCCTCCATGGATATGGGCTTGTCTTCTCAGGGCTTGTGCATGCACTTTGAATGTGCCTCTGGGATTGCAAGTTCATGGATGGTTGTTGAAGTTGGGTGCTTGTGATCATGTGCTTCTCAGCAGCTCCTTGATAAACTTTTACGGGAGATTTACGTGCCTGGAAGATGCGAGTGCTGTGTTCAATGGGGTGTTGCGGCATAACACGCTGACTTGGACGGCTAAAATCGTTAGTGGTTGCAGGGAAAGGCATTTCTCTGAGGTTTTTGGCGACTTCAGGGAGATGGGAATGCGAGGGGTGAAGAAGGACTGCTTCACGTTTTCTAGTGTTCTGAAGGCTTGTGGAAAGATGCTGAATCAGGAACGATGTGGTGAACAAGTCCATGCTGATGCCATCAAACTTGGGCTGGTCTCGGATCACTATGTGCAGTGTAGTTTGATTGCCATGTATGGAAGATGTGGGTTGTTGACAGATGCAAAACATGTGTTTGAGATGACCCGAGAGGAGAGAAAGGTTGATTGTTGGAATGCTATGCTTATGGGTTACACACAGAATGGTTTCCACATTGAAGCTGTCAAGTTTCTGTATCAGATGCAGGCAGCTGGAATGCAGCCCTGGGAGTCTCTGCTTAAAAAATTAAGAATTGCTTGTGGCAGTATTACCTACTCAAGTATGAATTAA 1269 0.4547 MVLITAPVPTLTLPTHHLLLDQNLDLKNNNPRTLSSPSHQLELLPPLRYPIHTFPRPLIPQTTTFTKKEIKKKKRKEATTLDILHLMDAIPFPIPIDIYTSLIKECTVSGDPETAIELYTHISKSDIKPPLPFLNRILIMFVSCGMLENARHMFDKMRVRDFNSWATLFVAYYDNAEYEEATAVFVNMLGQLGMLQFPPWIWACLLRACACTLNVPLGLQVHGWLLKLGACDHVLLSSSLINFYGRFTCLEDASAVFNGVLRHNTLTWTAKIVSGCRERHFSEVFGDFREMGMRGVKKDCFTFSSVLKACGKMLNQERCGEQVHADAIKLGLVSDHYVQCSLIAMYGRCGLLTDAKHVFEMTREERKVDCWNAMLMGYTQNGFHIEAVKFLYQMQAAGMQPWESLLKKLRIACGSITYSSMN 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00721 422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Phco4g00721 422 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 319 420 - -
Phco4g00721 422 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 263 401 IPR046960 GO:0003723|GO:0009451
Phco4g00721 422 Pfam PPR repeat 341 363 IPR002885 -
Phco4g00721 422 Pfam PPR repeat 137 161 IPR002885 -
Phco4g00721 422 Pfam PPR repeat 98 121 IPR002885 -
Phco4g00721 422 Pfam PPR repeat 370 398 IPR002885 -
Phco4g00721 422 NCBIfam pentatricopeptide repeat 370 402 IPR002885 -
Phco4g00721 422 Gene3D Tetratricopeptide repeat domain 271 420 IPR011990 GO:0005515
Phco4g00721 422 Gene3D Tetratricopeptide repeat domain 96 215 IPR011990 GO:0005515
Phco4g00721 422 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 95 129 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00721 Phco-Chr4 5512670 5513938 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00721 4 5512670 5513938 Phco4g00721 4 5512670 5513938 ECH