Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00709 ATGGGACTAACTAGGGTTTTCGGTGCGACCGCCGGCAGGGCCTTCATGGCGGCGGCGGCGAAGAGCGCGGCCAAGGTAAAAGCTGCTCCATCCGACGGAGCCGGCACAAAACCCGCGGTGAAGAAAACGGCTATGGTCAGAGCCAACACCGGCATTCAGAAGGCGGTTCCGGTCTCTTCCGAGCTCGGGAATTTCGTCGGCGCTTCTGAAGTGTCGCGAACTGTCGCGGTTAAAAAAGTGTGGGAGTACATCAAGCAGCAGAATCTTCAGAATCCTTCAAATAAGAAGGAGGTCTTCTGTGATGCAAAGCTGAAGACCATTTTTGGTGGGAAGGATAAGGTTGGGTTCACAGAGATTGCTTCATTGCTGTCTAATCATTTTGTGAAATCAGGCTGA 396 0.5278 MGLTRVFGATAGRAFMAAAAKSAAKVKAAPSDGAGTKPAVKKTAMVRANTGIQKAVPVSSELGNFVGASEVSRTVAVKKVWEYIKQQNLQNPSNKKEVFCDAKLKTIFGGKDKVGFTEIASLLSNHFVKSG 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00709 131 Gene3D SWIB/MDM2 domain 46 131 IPR036885 -
Phco4g00709 131 ProSiteProfiles SWIB/MDM2 domain profile. 51 129 IPR003121 -
Phco4g00709 131 Pfam SWIB/MDM2 domain 55 127 IPR003121 -
Phco4g00709 131 CDD SWIB-MDM2_like 56 127 - -
Phco4g00709 131 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 27 128 - -
Phco4g00709 131 SUPERFAMILY SWIB/MDM2 domain 45 129 IPR036885 -
Phco4g00709 131 SMART swib_2 52 131 IPR019835 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00709 Phco-Chr4 5422423 5423990 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Phco4g00709 SWIB 5.2e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00709 4 5422423 5423990 Phco4g00709 4 5422423 5423990 ECH