Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00705 ATGGTAGACCTTGGTGAAGCAAGTAACCCTAATGCTATATGCTTTTCTGAAACGTTCTTACCACACGCCTTTCTTTTCCTACAGCTTTGCTCTCTTCCTTCTGACAGGGGAAAACGAATCTCATCCTTTTCAACTCTTCCAACCGCCATGGCCGATCGCTTGACGCGTATTGCCATAGTGAGCAACGACAGGTGCAAGCCCAAGAAGTGCCGCCAGGAGTGCAAGAAGAGTTGTCCAGTGGTCAGAACCGGTAGATTGTGTATTGAGGTTACTTCAGCCTCGAAGATTGCTTACATTTCTGAGGAATTGTGCATTGGATGCGGTATATGTGTTAAGAAATGCCCTTTTGAAGCTATTCAGATTATCAACTTGCCAAAGGACTTGGATAAGGACACTACTCATAGATACGGTCCCAATACTTTTAAGCTGCATAGGTTGCCCGTGCCAAGGCCCGGCCAGGTGCTTGGGTTGGTTGGGACGAATGGGATTGGGAAGTCCACTGCCCTTAAAGTTTTGGCTGGGAAGTTGAAGCCGAATTTGGGTCGATTCACTAACCCCCCTGATTGGCAGGAAATTTTAACCTACTTTCGAGGATCTGAATTGCAGAATTACTTTACTCGGATTCTCGAGGATGATTTGAAGGCTATCATCAAGCCTCAGTATGTTGACCATATTCCAAAAGCTGTGCAAGGAAACGTGGGGCAGGTGCTAGACCAGAAAGATGAAAGAGATATGAAGAAGGAGCTTTGTGCTGATCTTGAGCTTAATCAAGTTATAGATCGTAATGTTGGGGATCTGTCAGGTGGTGAGCTCCAAAGATTTGCCATTGCGGTTGTTGCAATCCAGAATGCTGAGATATACATGTTTGATGAACCGTCTAGTTATCTTGATGTGAAACAGAGGCTGAAAGCTGCACAAGTTGTTCGATCATTGCTTAGGCCTAATAGTTATGTAATTGTTGTAGAGCATGATCTCAGTGTCTTGGACTACTTATCAGACTTTATTTGCTGTCTATATGGCAAACCTGGTGCATATGGAGTTGTGACACTTCCTTTCTCGGTCAGAGAAGGAATTAACATTTTCTTGGCTGGCTTTGTTCCAACAGAAAATCTTAGGTTTCGGGATGATTCACTTACCTTCAAGGTTGCTGAGACTCCACAGGAAAGTGCTGAGGAAGCTCAGACGTATGCTCGATATAAATACCCAACCATGACCAAAACTCAAGGCAATTTTAAACTTCGTGTAGTTGAAGGAGAATTTACTGATTCTCAGATTATTGTGATGCTGGGTGAGAATGGGACAGGAAAGACAACATTTATTCGTATGCTGGCTGGTTTATTGAAACCCGACAGCATAGAAGGGGGATCTGAAGCTGAGATGCCTGAATTTAATGTTTCATACAAGCCTCAGAAGATTAGCCCGAAGTTCCCGTCAACTGTTAGGCACTTGCTACATCAAAAAATACGTGATGCATATACTCATCCCCAGTTTGTTTCAGATGTGATGAAGCCACTTCTTATCGAACAGTTAATGGACCAAGAAGTTGTGAATCTTTCTGGAGGAGAGTTGCAGAGAGTTGCTCTGTGTCTCTGTCTTGGCAAGCCTGCAGATATCTATCTGATAGACGAGCCAAGTGCATATCTAGATTCTGAACAGCGAATTCATGCTGCCAAAGTGATCAAGAGGTTTATTCTTCATGCAAAGAAAACGGCTTTTGTTGTTGAGCATGATTTCATCATGGCAACTTATCTTGCAGACAGAGTTATTGTGTATGCGGGTCAACCATCAATTGATTGTATTGCAAATTCTCCACAATCATTGTTGTCTGGGATGAATCTTTTCTTATCGCATCTTGATATCACTCTGCTGGGTCTTATTATTACCTTGATGACTGATTCCATATACTCAGGCTGTTGTTCTTTCATCAATACAACATTGCATCAGTTTGAGCTTTTCTTGGGATCGCAGATTTAG 1974 0.4286 MVDLGEASNPNAICFSETFLPHAFLFLQLCSLPSDRGKRISSFSTLPTAMADRLTRIAIVSNDRCKPKKCRQECKKSCPVVRTGRLCIEVTSASKIAYISEELCIGCGICVKKCPFEAIQIINLPKDLDKDTTHRYGPNTFKLHRLPVPRPGQVLGLVGTNGIGKSTALKVLAGKLKPNLGRFTNPPDWQEILTYFRGSELQNYFTRILEDDLKAIIKPQYVDHIPKAVQGNVGQVLDQKDERDMKKELCADLELNQVIDRNVGDLSGGELQRFAIAVVAIQNAEIYMFDEPSSYLDVKQRLKAAQVVRSLLRPNSYVIVVEHDLSVLDYLSDFICCLYGKPGAYGVVTLPFSVREGINIFLAGFVPTENLRFRDDSLTFKVAETPQESAEEAQTYARYKYPTMTKTQGNFKLRVVEGEFTDSQIIVMLGENGTGKTTFIRMLAGLLKPDSIEGGSEAEMPEFNVSYKPQKISPKFPSTVRHLLHQKIRDAYTHPQFVSDVMKPLLIEQLMDQEVVNLSGGELQRVALCLCLGKPADIYLIDEPSAYLDSEQRIHAAKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVYAGQPSIDCIANSPQSLLSGMNLFLSHLDITLLGLIITLMTDSIYSGCCSFINTTLHQFELFLGSQI 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00705 657 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 104 115 IPR017900 -
Phco4g00705 657 Pfam Possible Fer4-like domain in RNase L inhibitor, RLI 55 86 IPR007209 -
Phco4g00705 657 ProSitePatterns ABC transporters family signature. 518 532 IPR017871 GO:0005524|GO:0016887
Phco4g00705 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 340 IPR027417 -
Phco4g00705 657 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 119 364 IPR003439 GO:0005524
Phco4g00705 657 Gene3D - 386 621 IPR027417 -
Phco4g00705 657 Pfam 4Fe-4S binding domain 98 120 IPR017896 -
Phco4g00705 657 CDD ABC_RNaseL_inhibitor_domain1 127 381 IPR034348 -
Phco4g00705 657 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 50 622 IPR013283 -
Phco4g00705 657 FunFam ATP-binding cassette sub-family E member 1 384 624 - -
Phco4g00705 657 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 95 124 IPR017896 -
Phco4g00705 657 Pfam ABC transporter 416 546 IPR003439 GO:0005524
Phco4g00705 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 591 IPR027417 -
Phco4g00705 657 ProSitePatterns ABC transporters family signature. 266 280 IPR017871 GO:0005524|GO:0016887
Phco4g00705 657 Gene3D - 47 381 IPR027417 -
Phco4g00705 657 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 393 618 IPR003439 GO:0005524
Phco4g00705 657 SMART AAA_5 151 343 IPR003593 GO:0016887
Phco4g00705 657 SMART AAA_5 422 596 IPR003593 GO:0016887
Phco4g00705 657 SUPERFAMILY 4Fe-4S ferredoxins 54 194 - -
Phco4g00705 657 PRINTS ABC transporter family E signature 128 148 IPR013283 -
Phco4g00705 657 PRINTS ABC transporter family E signature 156 181 IPR013283 -
Phco4g00705 657 PRINTS ABC transporter family E signature 205 231 IPR013283 -
Phco4g00705 657 PRINTS ABC transporter family E signature 73 88 IPR013283 -
Phco4g00705 657 PRINTS ABC transporter family E signature 189 205 IPR013283 -
Phco4g00705 657 PRINTS ABC transporter family E signature 101 125 IPR013283 -
Phco4g00705 657 FunFam ATP-binding cassette, sub-family E, member 1 50 381 - -
Phco4g00705 657 Pfam ABC transporter 151 293 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00705 Phco-Chr4 5392693 5400599 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00705 4 5392693 5400599 Phco4g00705 4 5392693 5400599 ECH