Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00700 ATGGCGAGTGAATTTGGCGCCAACGGTCCTTCAACTCCTGCGTCCAATTCCGCGGAGTCCTTCATTGGCTGCTTCATAAGCTTGATTTCGAAGTGCGAGATTCGCTACGAGGGCGTTCTCTATTTCCTTAACGTCCAGGATTCCACCATCGGCTTGAAGAACGTTAGATCTTATGGAACGGAGGGGAGAAGAAAAGATGGCACACAAGTTCCTCCAAGCGATAAGGTTTATGAGTACATTCTTTTCCGAGGAAGTGACATTAAGAATTTGCAGATCAAGTCACCCTCCACATCTACTAAACCAGAAGAGCAGGTTTTTAGTGATGCAGCTATTATTCAGTCACAATGTTCTGGGTCCCCAAGTTCTCCCGTGGCCTCAGTTGGTGGTAGAAATTTGACAGAATCAATTCCAAGGCAAGATACCCCTGCTATATCTAGTAAACCCTTTCCTGTTGGGTTCCCTTCTTATCAGCCTGTAACTGACCTAGGACCTTCAAATTCGTCTACTGCTACTCAAGTTGCTAGTCATCCATCTTTTTCTTCAGCAATGTATTGGCATGGGCCTAGTGATATATCTAGCAGTGGTTCTCATTCTCTGCTACAATCTAGTTCCCTTTACTCCCAATCAATGACAGCATCCGAAGTTGTGCAGAATCAGATGAAAAATGCAGAAACTCAGTTACCTACAAAAGGGGGATGGACAGGTTTTTCAGAGTGTGGTCTACCTGTATCTTCTGCCATGACTTCTTCTCTTATTAATCTGACTCATTCGCATTCTCTTACCTCTTTAAAAAATTCTGATTCTCTTGATGTTCCATCTCTTTTGTCTACTAAGATACCCATGCCATATTCTGCATCCATGACTTTTGATGGATCAAACATGCCTCAGTTTTCTTCACCTTTTCAAGACATTTGTCCTGACCCAAGGCCAATTCATCCTCGACATTCTGCTCCTTCATTTGTAGATTCTACTTCACGTCCCTTGCCAAAAGCACCATCTTTGTTAACTCCAGATCAATTTGTGAATCCTACAGAACAGTTATTATCTAATGCACATAATTTGAACCCAAATCAGAAGGGTATGGATTCTCTGACTCTAACATCCTTTGGTTCCTCAGCTTTAATGCCATTTCCAGCATCTCAGGCACCACTTCTTCCACTGCCTACTTCAGTGCAAAAGCCTCAATACACAGCTCCACAATTCACTGAAGAGTTTGATTTTGAGGCCATGAATGAAAAGTTCAGAAAGGATGAAGTATGGGGCTCTCTTGGAAAGGCAACCACAAAAATAGAGGGAGTACAGGATAATACTTCTCTCAATTTGGGTGACAGGGAATATTATGGGATGGTACCAAACCATAAGTCAGCATACAAGAAAGATGATTTTTTTGACACAATTTCATGTAACTCTTTGACCCGTGGATCAAGGAACGGACAAAATCGTTTCTCTGAGAGAATGAAACAGGATACCGAGACATTTGGCAATTTCCAGCAGAGGCATAATTTCAGCTATGGTGCTGGACGGGGTGAGAATTTCAGGGGCTCATATAATTGGGGAGGAAGGGGTTATGGCTATGGTGGGAGGGGGCGTGGTCCAAACTTTCCTCTCTAG 1611 0.4308 MASEFGANGPSTPASNSAESFIGCFISLISKCEIRYEGVLYFLNVQDSTIGLKNVRSYGTEGRRKDGTQVPPSDKVYEYILFRGSDIKNLQIKSPSTSTKPEEQVFSDAAIIQSQCSGSPSSPVASVGGRNLTESIPRQDTPAISSKPFPVGFPSYQPVTDLGPSNSSTATQVASHPSFSSAMYWHGPSDISSSGSHSLLQSSSLYSQSMTASEVVQNQMKNAETQLPTKGGWTGFSECGLPVSSAMTSSLINLTHSHSLTSLKNSDSLDVPSLLSTKIPMPYSASMTFDGSNMPQFSSPFQDICPDPRPIHPRHSAPSFVDSTSRPLPKAPSLLTPDQFVNPTEQLLSNAHNLNPNQKGMDSLTLTSFGSSALMPFPASQAPLLPLPTSVQKPQYTAPQFTEEFDFEAMNEKFRKDEVWGSLGKATTKIEGVQDNTSLNLGDREYYGMVPNHKSAYKKDDFFDTISCNSLTRGSRNGQNRFSERMKQDTETFGNFQQRHNFSYGAGRGENFRGSYNWGGRGYGYGGRGRGPNFPL 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00700 536 ProSiteProfiles FFD box profile. 455 470 IPR025761 -
Phco4g00700 536 SMART FDF_2 399 497 IPR019050 -
Phco4g00700 536 ProSiteProfiles Sm domain profile. 13 96 IPR047575 GO:0003723
Phco4g00700 536 ProSiteProfiles DFDF domain profile. 393 429 IPR025762 -
Phco4g00700 536 SMART LSM14_2 15 116 IPR025609 -
Phco4g00700 536 Pfam Scd6-like Sm domain 21 94 IPR025609 -
Phco4g00700 536 Gene3D - 12 97 - -
Phco4g00700 536 SUPERFAMILY Sm-like ribonucleoproteins 20 95 IPR010920 -
Phco4g00700 536 Pfam FDF domain 400 495 IPR019050 -
Phco4g00700 536 CDD LSm14_N 18 92 IPR025609 -
Phco4g00700 536 ProSiteProfiles TFG box profile. 477 497 IPR025768 -
Phco4g00700 536 PANTHER SCD6 PROTEIN-RELATED 16 531 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00700 Phco-Chr4 5307531 5313639 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00700 4 5307531 5313639 Phco4g00700 4 5307531 5313639 ECH