Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00642 ATGGCTGGGTCACTGACGCCAGGGGCGATAAAGGAAATATGCGGTGCCAATTGTTCCAGCGGTTTGAAGCCGGTTTTGCAAGTTATAGATTTGAAGCTAGTGCAGTCTCAACAAGCCAGCAACACCGAGAGGTACCGTCTGGTTCTCTCCGACGGTTCCTTTTACCAGCAAGGCATGCTCGCTACGCAGATGAACGAACTGGTTCATTCCGGAAAGTTGCAAAAAGGTTCCGTTGTTAGGCTCGTTCAGTTTATCTGCAACGATGTCCAGAACCGCAAGATTATTGTCATAATTGACCTAGATGTTGTAGTGGAAAAATGTGAGTTGATTGGAGAACCTGTCGCGTTACCAAAAGATGGATCTGCAGAATCTGGCACTGGTCAATCAGGAGTCACCCCTGGAAATTCACAACCTTTGAATAACCGTTCACACTCAGGCGGCGTGACTGCTAGACCGAACATGGCTGTACCATCTCCAGATCATCCAAGAGTGAATGCCAGTAGTGTTTATACTGGTATTTCTAACTCTGGATCTAGTTATTCCAGCAATGCACCTCCTACATATCCTAAAGTAGAACCTGGAGTTAATTTGTCTAGATCAACACCATTCACTGGATCTCGTGGTGATCAGAGCACGGGTATTGGTCATCCCCAATCTGAGGCTTCAAGGTCCTTGCCAAACTCTTATGCTCGTCCATCTCAGCCTATGTATCGGCAGCCATCTCCAATGTACACTAATAGAGGGCCAATTGTAAAAAATGAAGCTCCCCCCAGGATAATTCCAATAGCAGCATTGAATCCTTACCAGAATATGTGGACGATTAAAGCCAGGGTAACAGCTAAGGGAGAACTCAGGCACTATAACAATGCTCGAGGTGATGGCAAGGTGTTTTCATTTGACCTTTTGGATTCTGATGGTGGGCAAATTCGGGCAACTTGCTTCAATAGTGTGGCTGATCAGTTCTATAATTTAATTGAAGCTAGTAAGGTGTACCTAGTTTCCAGGGGAAGCGTAAAGCCAGCTCAGAAGAATTTCAATCACCTTCCCAATGACCAAGAGCTAACTCTTGATATGACATCGATTATACAGCCATGCCCTGATGATGATAACTCAATTCCAAAACAGAATTTTAATTTTCGCCCCATTAGTGAAATTGAAAGTTTGGAAAGCAACACCATTGTGGATGTGATTGGTGTGGTGACTTCAATTAGTCCTACAGCTTCAATCATGAGAAAAAATGGTACTGAAACTCAGAAGAGAACACTCCAGTTGAAAGACATGTCTGGCCGAAGTGTTGAGTTAACTTTGTGGGGAAATTTTTGCAACGTTGAAGGACAAAAGCTGCAAAATATCTGTGATGATGGGGCATTTCCGGTTTTGGCTGCAAAAGCTGTCAGAATTAATGATTTTAATGGAAAGTCTGTTGGGACTATAATGACTAGCCTGCTGTTCGTAGAGCCTGATTTTCAAGAGGCTTACACACTTAAAAGATGGTTTGAAAATGAAGGGAAAAGTGTCCCAACTCTCTCTATTTCTAGGGATACATCTAGTTTTCCTAAGAATGATAATCGGAAGACTGTATCTCAAATTAAAGACGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTGTCTGTGCAACTATTTCATACATTAAGTATGATAACTTCTGTTACCCAGGATGTCCTATCATGATAGGGGATAGGCAATGTAACAAAAAAGTGACTAATAATGGTGATGGAAAATGGATTTGTGATAGGTGTAACCAATCTGTTGACGCTTGTGATTATAGGTACATACTGTCATTCCAGATAATGGATCACACAGGTGTAACATGGGTTACTGCTTTCCAGGAGAGTGGTGAGGAGATCATGGGCGTGCCTGCAAAAGATTTGTATTATCTGAAGTATGAAGAGCAAGATGATGTAAGATTTGCTGAAATCATCCGGAAGATTCTCTTCACCGAGTATGTGTTCAAGTTGAAAGTAAAGGAGGAGATATTCAGTGATGAACAACGCGTTAAGTCAACGGTAGTTAAAGCAGAAAAGGTAAACTATGCATCTAAATCCAGAGTTAGTTTGGAATTGATTGATAAACTCTTGAATGGGAAATCAGAAGCTACTACCACCGTTCCAAACTCTTTATCCGGTAATACTGGACAAGTAACGCCATCAGCTTATAACACAATAAAGAGTAGCACTAATAGCAGTAGAGATTTTGGGATGCCAGCAAATCAAGTGGGTCAACAGTATGGAAACCAATATGGCAATTTTGCTTCAGCAGGTGCTCCTAGTGCATATACATCATGCACCAACTGTGGAGGTTCTGGTCATACTTCTATACTTTGCCCAAATATTAGAAATCTGCCTGGACAGTCTTCAGGTGGGGGCTTTTCCAACAGGGCATCATATGGTGGATCAGGTGGTGGTGCTTCTGGTGAATGCTTTAAATGCCATCAACCTGGCCACTGGGCAAGAGACTGTCCTGGTTCCAGTGCACCAACTGCATCATATGGAAGCGCTAATACAATGCAGGGAAGATATGGTATTGCTCAAAACCAACAGTTTGGAGGATATTGA 2583 0.4251 MAGSLTPGAIKEICGANCSSGLKPVLQVIDLKLVQSQQASNTERYRLVLSDGSFYQQGMLATQMNELVHSGKLQKGSVVRLVQFICNDVQNRKIIVIIDLDVVVEKCELIGEPVALPKDGSAESGTGQSGVTPGNSQPLNNRSHSGGVTARPNMAVPSPDHPRVNASSVYTGISNSGSSYSSNAPPTYPKVEPGVNLSRSTPFTGSRGDQSTGIGHPQSEASRSLPNSYARPSQPMYRQPSPMYTNRGPIVKNEAPPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGDGKVFSFDLLDSDGGQIRATCFNSVADQFYNLIEASKVYLVSRGSVKPAQKNFNHLPNDQELTLDMTSIIQPCPDDDNSIPKQNFNFRPISEIESLESNTIVDVIGVVTSISPTASIMRKNGTETQKRTLQLKDMSGRSVELTLWGNFCNVEGQKLQNICDDGAFPVLAAKAVRINDFNGKSVGTIMTSLLFVEPDFQEAYTLKRWFENEGKSVPTLSISRDTSSFPKNDNRKTVSQIKDEKLGTSEKPDWISVCATISYIKYDNFCYPGCPIMIGDRQCNKKVTNNGDGKWICDRCNQSVDACDYRYILSFQIMDHTGVTWVTAFQESGEEIMGVPAKDLYYLKYEEQDDVRFAEIIRKILFTEYVFKLKVKEEIFSDEQRVKSTVVKAEKVNYASKSRVSLELIDKLLNGKSEATTTVPNSLSGNTGQVTPSAYNTIKSSTNSSRDFGMPANQVGQQYGNQYGNFASAGAPSAYTSCTNCGGSGHTSILCPNIRNLPGQSSGGGFSNRASYGGSGGGASGECFKCHQPGHWARDCPGSSAPTASYGSANTMQGRYGIAQNQQFGGY 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00642 860 SUPERFAMILY Nucleic acid-binding proteins 258 372 IPR012340 -
Phco4g00642 860 MobiDBLite consensus disorder prediction 122 148 - -
Phco4g00642 860 SUPERFAMILY Nucleic acid-binding proteins 1 111 IPR012340 -
Phco4g00642 860 SUPERFAMILY Nucleic acid-binding proteins 376 506 IPR012340 -
Phco4g00642 860 SUPERFAMILY Retrovirus zinc finger-like domains 801 832 IPR036875 GO:0003676|GO:0008270
Phco4g00642 860 Gene3D - 3 116 IPR012340 -
Phco4g00642 860 Gene3D - 767 837 - -
Phco4g00642 860 MobiDBLite consensus disorder prediction 197 241 - -
Phco4g00642 860 CDD RPA1_DBD_B 393 500 - -
Phco4g00642 860 FunFam Replication protein A subunit 510 701 - -
Phco4g00642 860 ProSiteProfiles Zinc finger CCHC-type profile. 816 830 IPR001878 GO:0003676|GO:0008270
Phco4g00642 860 Pfam Replication protein A OB domain 382 485 IPR031657 -
Phco4g00642 860 CDD RPA1N 8 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Phco4g00642 860 Gene3D - 370 509 IPR012340 -
Phco4g00642 860 MobiDBLite consensus disorder prediction 164 186 - -
Phco4g00642 860 CDD RPA1_DBD_A 261 363 - -
Phco4g00642 860 SMART c2hcfinal6 815 831 IPR001878 GO:0003676|GO:0008270
Phco4g00642 860 SMART c2hcfinal6 770 786 IPR001878 GO:0003676|GO:0008270
Phco4g00642 860 MobiDBLite consensus disorder prediction 115 250 - -
Phco4g00642 860 SUPERFAMILY Nucleic acid-binding proteins 523 702 IPR012340 -
Phco4g00642 860 CDD RPA1_DBD_C 527 700 IPR047192 -
Phco4g00642 860 NCBIfam replication factor-a protein 1 (rpa1) 232 699 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Phco4g00642 860 FunFam Replication protein A subunit 371 509 - -
Phco4g00642 860 FunFam Replication protein A subunit 4 117 - -
Phco4g00642 860 Gene3D - 258 368 IPR012340 -
Phco4g00642 860 Pfam Replication factor-A C terminal domain 543 692 IPR013955 -
Phco4g00642 860 Pfam Zinc knuckle 815 830 IPR001878 GO:0003676|GO:0008270
Phco4g00642 860 Pfam Replication factor-A protein 1, N-terminal domain 5 104 IPR007199 GO:0003677|GO:0005634|GO:0006260
Phco4g00642 860 Pfam OB-fold nucleic acid binding domain 272 359 IPR004365 GO:0003676
Phco4g00642 860 FunFam Replication protein A subunit 258 368 - -
Phco4g00642 860 Gene3D - 510 701 IPR012340 -
Phco4g00642 860 PANTHER REPLICATION FACTOR A 1, RFA1 272 692 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00642 Phco-Chr4 4856257 4859607 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00642 4 4856257 4859607 Phco4g00642 4 4856257 4859607 ECH