Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00589 ATGGCTGCCCTGCAATACTTGGAATCGCTGCGCAACGCGCATCCTGAGCTCTCCGATTGGTACAATTCACTCGCGGATCTGTACCAGAAGAAGCTCTGGCATCAACTCACCCTCAAGCTCGAGCAGTTTGTCGCACTCGCTGTTTTTCAGGCTGGTGATGCGTTGATTCAATTATATCACAATTTCATCACAGACTTCGAGACTAAAATCAACCTTCTGAAGCTCGCACATTTTGCTGTTATAGTTTCTCGGCAGTATTCTGAAAAGGAAGCTGCTGTTGCTTATCTTGGAGGAGTCATTGAGAAGTTGCAGGCCACTAGAGAGCAGCGCATAGAAGAACCTATCCTTTACATTAAGATGCAAATAGCAATATTCAAGCTTGAGCAAGGTGACCAGAAGGAAAGCAAGAAACTCCTAGAAGATGGGAAGACTACACTTGACAGCATGACAGATATTGATCCATCTGTATATGCTAACTATTTCTGGGTATCTTCTCAATATCACAAGACACGCCAAGAATTTGCAGAGTTCTACAAAAGTGCCCTTCTCTATCTGGCATACACATCGGTGGAGTCTCTATCAGAATCATTCAAGCTGGATTTAGCATTTGATTTGTCCCTCTCTGCCCTTCTTGGAGACAACATCTACAACTTTGGAGAGCTACTTGCCCATCCTATAATCAAGAGCCTTCTTGGGACAAAAGTGGAATGGCTTTACTATATTCTGCAGGCGTTCAATTCTGGTGATTTAGAAAGATATCAAGAATTGTGTCGGGTGCATAATGCTGCTTTAAGAGCCCAACCAGCACTGGTTCAAAATGAAAAGAAGTTGTTGGAAAAGATCAACATTCTCTGTCTGATGGAGATTATATTCAGTCGGCCTTCAGAAGACCGAACTATTCCCTTGAGTGTAATTGCTGAGCGGACAAAACTTTCTATAGAGAATGTGGAACATCTCCTAATGAAGAGCTTATCTGTTCATCTAATTGAGGGTATAATTGATGAAGTTGAGGGCACAGTGCATGTTTCCTGGGTGCAACCAAGAGTTCTGGGTATTCAACAGATCAAATCCTTACGGGATCGACTTGACAGTTGGACAGGGAAAGTACACACTGCATTGTTGTCCATCGAGGCCGAAACACCTGATCTAATCGGATCGTGA 1161 0.4332 MAALQYLESLRNAHPELSDWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKEAAVAYLGGVIEKLQATREQRIEEPILYIKMQIAIFKLEQGDQKESKKLLEDGKTTLDSMTDIDPSVYANYFWVSSQYHKTRQEFAEFYKSALLYLAYTSVESLSESFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLERYQELCRVHNAALRAQPALVQNEKKLLEKINILCLMEIIFSRPSEDRTIPLSVIAERTKLSIENVEHLLMKSLSVHLIEGIIDEVEGTVHVSWVQPRVLGIQQIKSLRDRLDSWTGKVHTALLSIEAETPDLIGS 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00589 386 Gene3D - 83 343 - -
Phco4g00589 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 IPR000717 -
Phco4g00589 386 FunFam 26S proteasome non-ATPase regulatory subunit 13 homolog B 174 373 - -
Phco4g00589 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Phco4g00589 386 SUPERFAMILY "Winged helix" DNA-binding domain 275 348 IPR036390 -
Phco4g00589 386 Pfam PCI domain 238 343 IPR000717 -
Phco4g00589 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 4 384 IPR035298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00589 Phco-Chr4 4459187 4464415 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00589 4 4459187 4464415 Phco4g00589 4 4459187 4464415 ECH