Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00587 ATGGATCAAAATAGAGGAGAGAGCTGGAGGGAATTAGTGAAGAAGATGCTTCCTCCTGGTGCTTCGATTCCTGTGGATGCTTCTAATCTTGATTACTCAATAGCTATGGAATATGTTGGTCCACCAGTTTCATATGAATTGCCAAGAGTTGAGCCTCTTGATGGAAACTCAAGAGCAATTCCCACTGCTGAGCCACTCTCTGGATCACAGAGATCAAATACCCATGTGGGGTCTATGGTGATTGAACCAATCCCCCTGCCAGTGTCTCGTATTGCCGGTGTAACAAGTTCTCCTAATCAAAGTCCGAGGGTGTCAGGAAGCTCAGATTCTGTGGTTTCTGTCTTACAAAACCCAGATCTTTCTTCCGCTTCACCTTCGGCTTCACCTGCTTCAGTACATAATCCTCCAACTAATCCTCCACAGCCGGTGGTTAATGAAGTGAAGAGGGCGCCGGTTGTCACTTTTAATACCGTTGATAGATCTCAGAGGAAAGAGGTGGAGGTTGTGAAGCCAGTTTATTCTGAATATGTTGGAGTTTTGAAGGAAAGGAAGAAAAAGAAAATAAGAGTTTGTTATAGGTGTGGAAAAGGGAAGTGGGAAACTAAGGAGTCTTGCATAGTGTGTAATGCCAAGTATTGCAGCAACTGTGTGCTAAGGGCAATGGGATCAATGCCTGAAGGACGCAAATGTGTAACATGCATTGGTCAACCAATTGATGAATCAAAGCGTCTGAAACTGGGTAAATATTCAAGGGTGTTGTCCCGATTGTTAAGTCCTCTAGAAGTCAAGCAAATTATGAAAGCAGAGAAAGAATGTTCTGCTAATCAGCTTCGGCCCGAGCAGCTTATCGTCAATGGGTTGCCCCTGAAGCCAGATGAGATGGCAGAGCTACTTGGATGTCCGTTACCTCCACGGAAGCTGAAACCTGGTAGATATTGGTATGACAAAGAGTCTGGTCTCTGGGGAAAGGAAGGAGAAAAACCTGACAGAATCATTAGTTCAAACTTGAATTTCACTGGGAAACTTAGCCTCAATGCTAGTAACGGAAACACCGAGGTTTACATGAATGGTCGAGAGATCACAAAACTTGAACTGAGGGTACTCAGGCTGGCAAATGTGCAGTGTCCTCGTGATACACACTTTTGGGTTTATGATGATGGTCGTTATGAGGAGGAAGGTCAAAATAATATCAGAGGAAACATTTGGGAGAAGGCCTCAACAAGATTCATATGTGCCTTATTCTCTCTACCCTTTCCCCATGGTCAGCCTCATGGGCTAAAGGATGAAACTAGTCACTATACCACAGTACCTATTTATCTGGAACAGAAAAAAACTCAGAAGCTTCTTCTTCTTGGAATTCAAGGATCTGGTACTAGCACTATATTTAAGCAGGCCAAGTTTATGTATGGGAACAAGTTTTCTGCTGAGGAGCTGCAGGATGTCAAACTGATGATCCAGAGTAACATGTATAAATATCTTAGTATTTTACTTGACGGGAGAGAGCGTTTTGAAGAGGAGGCTGTTTCTAGAATGAATGAACAAGGTTCTCCTGGTCAAACTACGGAAACAAGTAGCAATGGTGAAGGTAATACTAGTGAATGCATCTATTCCCTCAACCCAAGGCTAAAACATTTCTCTGACTGGCTCCTGGACATTATAGCCACTGGGGATTTGGATGCCTTCTTCCCTGCAGCCACACGTGAATATGCACCATTAGTTGAAGAAGTATGGAAGGATCCTGCCATACAAGAAACCTTCAAAAGAAAAGATGAACTTCACTTTCTTCCAGAAGTTGCCGAGTACTTCTTAAGCCGGGCTGTGGAGATATCTAGTAATGAATACGAACCTTCTGAAAGGGACATAGTATATGCAGAAGGGGTCACTCAGGGAAATGGTTTGGCTTTCATGGAGTTTTCACTTGATGACCGTGTCCCAAAGTCGGACACTTATTCAGATAACCTGGATGCTCAGCTGCCACCACTGACCAAGTATCAACTCATAAGAGTAAATGCCAAGGGCCTTAATGAGGGCTGCAAGTGGGTTGAAATGTTTGAAGACGTTCGAGCTGTGGTCTTTTGCGTTTCCTTAAGTGACTATGATCAGTTGTGGCTTTCCCCAGACAGTAATGGCAGTGGAACACTTGTTCAAAACAAGATGGTACAAAGCAAGGAGCTTTTTGAGACCATGGTAAGACACCCTTGCTTCAAAGACACCCCTTTGGTTCTGGTCCTTAACAAGTATGATATCTTTGAGGAAAAGATCAGCAGGGTGTCCCTAAATACATGTGAATGGTTCAGTGATTTTTGTCCCGTGCGTGCACACCATAATAACCAGTCACTGGCCCATCAGGCCTACTTCTATGTTGCTATGAAATTCAAGGACCTTTATGCATCCCTCACGGGGAAAAAACTCTTTGTGGCACAAGCTAGGGCAAGGGAACGAGTGACTGTTGATGAGGCATTCAAGTACATAAAAGAGGTCCTCAAATGGGATGAAGAGAAGGAGGAAAATTTCTATGGTCCACCTGAAGATTCATTTTACAGCACAACAGACATAAGCTCCTCTCCCTTTGTCAGACAAGAGTGA 2586 0.4374 MDQNRGESWRELVKKMLPPGASIPVDASNLDYSIAMEYVGPPVSYELPRVEPLDGNSRAIPTAEPLSGSQRSNTHVGSMVIEPIPLPVSRIAGVTSSPNQSPRVSGSSDSVVSVLQNPDLSSASPSASPASVHNPPTNPPQPVVNEVKRAPVVTFNTVDRSQRKEVEVVKPVYSEYVGVLKERKKKKIRVCYRCGKGKWETKESCIVCNAKYCSNCVLRAMGSMPEGRKCVTCIGQPIDESKRLKLGKYSRVLSRLLSPLEVKQIMKAEKECSANQLRPEQLIVNGLPLKPDEMAELLGCPLPPRKLKPGRYWYDKESGLWGKEGEKPDRIISSNLNFTGKLSLNASNGNTEVYMNGREITKLELRVLRLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFICALFSLPFPHGQPHGLKDETSHYTTVPIYLEQKKTQKLLLLGIQGSGTSTIFKQAKFMYGNKFSAEELQDVKLMIQSNMYKYLSILLDGRERFEEEAVSRMNEQGSPGQTTETSSNGEGNTSECIYSLNPRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEEVWKDPAIQETFKRKDELHFLPEVAEYFLSRAVEISSNEYEPSERDIVYAEGVTQGNGLAFMEFSLDDRVPKSDTYSDNLDAQLPPLTKYQLIRVNAKGLNEGCKWVEMFEDVRAVVFCVSLSDYDQLWLSPDSNGSGTLVQNKMVQSKELFETMVRHPCFKDTPLVLVLNKYDIFEEKISRVSLNTCEWFSDFCPVRAHHNNQSLAHQAYFYVAMKFKDLYASLTGKKLFVAQARARERVTVDEAFKYIKEVLKWDEEKEENFYGPPEDSFYSTTDISSSPFVRQE 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00587 861 Gene3D - 475 625 IPR011025 GO:0007165
Phco4g00587 861 SUPERFAMILY Transducin (alpha subunit), insertion domain 473 624 IPR011025 GO:0007165
Phco4g00587 861 CDD G-alpha 446 831 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Phco4g00587 861 FunFam Extra-large guanine nucleotide-binding protein 3 639 837 - -
Phco4g00587 861 FunFam Extra-large guanine nucleotide-binding protein 3 475 625 - -
Phco4g00587 861 SUPERFAMILY FYVE/PHD zinc finger 165 234 IPR011011 -
Phco4g00587 861 ProSiteProfiles G-alpha domain profile. 444 839 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Phco4g00587 861 PRINTS Alpha G protein (transducin) signature 447 462 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Phco4g00587 861 PRINTS Alpha G protein (transducin) signature 687 715 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Phco4g00587 861 PRINTS Alpha G protein (transducin) signature 740 749 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Phco4g00587 861 PRINTS Alpha G protein (transducin) signature 614 636 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Phco4g00587 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 442 834 IPR027417 -
Phco4g00587 861 Pfam G-protein alpha subunit 442 827 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Phco4g00587 861 MobiDBLite consensus disorder prediction 512 532 - -
Phco4g00587 861 MobiDBLite consensus disorder prediction 92 131 - -
Phco4g00587 861 Gene3D - 642 838 IPR027417 -
Phco4g00587 861 MobiDBLite consensus disorder prediction 837 861 - -
Phco4g00587 861 MobiDBLite consensus disorder prediction 92 145 - -
Phco4g00587 861 MobiDBLite consensus disorder prediction 843 861 - -
Phco4g00587 861 MobiDBLite consensus disorder prediction 507 532 - -
Phco4g00587 861 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 221 832 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Phco4g00587 861 SMART galpha_1 427 817 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00587 Phco-Chr4 4439106 4444825 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00587 4 4439106 4444825 Phco4g00587 4 4439106 4444825 ECH