Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00549 ATGTGTTCCGTCTCGCCACTTGACACATTCACAGAGTTTCTCACCGAGGGTGCTGTAGTGTTGTTCATTACCATGGCTTCTAAATTCAAGCATGGATCCTCTATGGTTCGGAATATCACGCAGTTGAGCAATGATTTGGATCAGGAGGGTGAGAATGGGAGTGTTGGCCTTGCTACCTACACAGTTCACATTCCTCCGACGCCCGATAACCAGCCTATGGAGATTTCTCTGGAGAGGTCGAGTTCTCGGAGAGCGGAGGATCAATACGCTTCTAGTTCTTTGTTCACCGGTGGTTTTAACCAGCTCACACGTGCCCATTTGAAGGACAAGGTGATTGAGTCCGAATCCAGCCACCCCCAGATGACTGGTGCAAAAGGGTCCTCTTGCGCAGTGCCTGGGTGTGATGGAAAGGTCATGACTGACGAAAGAGGGTTGGATGTAGTCCCTTGTGAGTGCGATTACAAGATTTGTAGGGATTGTTACAGAGATGCTTTGAGGGCTGGTGAGGGGATCTGCCCTGGTTGCAAGGAGCCTTACAACGAGCAAGAGGTGAAATCACAGACACTGCCTTTGCCTCCTAGTGCTAGGATTAATAAGATGGAGAGGAGGTTGTCGTTGATGAAGTCAGGGACGTTGACGAGGAGCCAGACTAATGAGTTTGATCATGCTCAGTGGTTGTTTGAAAGCAAGGGGAGTTATGGATATGGGAATGCTATGTGGCCTAAAGAGTCTGAACCTGATGCCAGTTCTGTATCTGGTTCTGATTGGATGGGGGGCGACCCTAATGTGTTCAATGAAAAGCAATGGAAGCCCTTGACCCGGAAATTGAGTATCTCTGCTGCAATTCTCAGTCCTTATCGGCTCATTATATTTGTTCGGCTAGTGATTCTAGTTTTCTTTCTAAAGTGGAGGGTCCAAAACCCCAATGATGATGCAATCTGGCTGTGGGGCATGTCTGTGGTTTGTGAAATCTGGTTTGCCTTCTCCTGGGTGCTTGACCAGTTTCCTAAGCTCTTCCCCGTAAATCGTTTTGCTGATCTTGATGTTTTGAAAGAGAAGTTTGAGACTCCTAATCCCACCAATCCTACTGGGAAGTCTGATCTTCCGGGAGTAGATATGTTTGTGTCAACTGCTGATCCAGAAAAAGAACCACCACTTGTTACTGCCAATACCATTCTTTCTATTCTAGCTGCTGATTATCCTGTTGAGAAACTCTCTTGTTATGTCTCTGATGATGGTGGTGCGCTCCTAACTTTTGAGGCCATGGCAGAGGCTGCAAGTTTTGCCAATTTGTGGGTTCCCTTTTGCCGGAAGCATGAGATTGAACCCAGGAACCCAGAATCTTATTTTAATCTCAAGAGAGACCCCTACAAGAACAAAGTACGCTCTGACTTTGTGAGGGACCGCAGACGAGTAAAGCGTGAGTATGATGAGTTCAAGGTTCGGATTAATGGCCTTCCTGATTCAATCAGGCGGCGCTCTGATGCTTATAATGCTAGTCAAGAAATCAAAGCCATGAGGAAACAGAGAGAGAATGGAAATGAAGAACCAATGGAGAATTTGAAAATTCCTAAAGCTACATGGATGGCTGATGGTACTCACTGGCCTGGCACTTGGACAAATGCTGCGCCAGAGAATTCCAGGGGTGATCATGCCAGTATCATACAGGTAATGTTAAAACCCCCAAGTGATGAACCACTGACTGGCACCGCATCAGATTCAAATGCCTTGGATTTTACTGAAGTTGATATTCGTCTTCCTATGCTTGTCTATGTTTCTCGTGAAAAACGACCCGGCTATGATCACAACAAAAAGGCTGGGGCCATGAATGCCCTAGTTCGAGCCTCAGCCATAATGTCCAATGGCCCTTTCATTCTCAATCTTGACTGTGACCATTACATATATAACTCTCAGGCCATGAGAGAAGGAATGTGCTTCATGATGGACCGTGGTGGAGACAGGCTCTGCTATGTCCAATTTCCTCAAAGGTTTGAAGGGATAGACCCCAATGATCGCTATGCCAATCACAACACTGTCTTCTTTGATGTCAATATGCGTGCTCTTGATGGAATTCAAGGTCCTGTATATGTTGGCACAGGATGCCTATTTCGAAGAACTGCTCTCTATGGCTTTGATCCACCCCGGAACAAGGAAGAGACCGGTTGGTTTGGTAGAAAGAATAAGAAATCTTCAACAGTGGCATCGGTTTCTGAAGCTGGTGCTGAGGAACAGTCATTGAGGAATAATGACATTGAGGATGAAGAAATGATGACTGCTTTTGTTCCCAAGAAATTTGGCAACTCCAGTCTTCTTGTTGATTCAATCAGGGTGGCTGAGTTCCAGGGGCTACCCCTTGCTGATCATTCATCAATCAAATATGGACGTCCACCCGGTGCTCTAACACTCCCTCGGGATCCTCTTGATGCGGCTACCGTTGCTGAGGCCATCAATGTCATCTCATGCTGGTATGAGGACAAGACTGAATGGGGCATTAGAATTGGATGGATTTACGGGTCAGTTACTGAAGATGTTGTGACAGGTTATAGAATGCACAATAGAGGATGGAGGTCTATATATTGTGTGACCAAAAGGGATGCATTCCGTGGCACTGCTCCAATCAATCTCACGGACAGGCTTCACCAGGTTCTTCGGTGGGCAACAGGCTCAGTTGAGATCTTCTTTTCACGCAACAATGCTCTGTTGGCCAGCTCTAGATTGAAATTTCTGCAGCGGATTGCTTACCTCAATGTTGGAATCTACCCTTTCACTTCAATCTTCCTTATTGTGTATTGCTTCCTTCCTGCTCTTTCACTTTTCACTGATCAGTTCATTGTTCAAAGCCTTCAAGTCAACTTCCTAGTTTACCTCTTGGGAATAACCTTGAGCCTTGTCATCCTTGCTGTTTTGGAGATCAAGTGGTCTGGCATTGCGCTTGAAGAGTGGTGGAGGAATGAACAGTTCTGGTTGATTGGAGGCACCAGTGCTCATCTGGCTGCTGTGCTTCAGGGTCTGCTAAAGGTGATGGCTGGCATTGAGATTTCATTCACTCTGACATCAAAATCTGCTGGTGATGACGAAAATGACGAATATGCTGATCTCTATGTCCTCAAGTGGTCATCTCTTATGATACCACCAATCACAATCATGATGGTTAATTTGATAGCCATTGCTGTTGCAGTTAGCAGAACTATTTACAGTGAGGATCGTCAATGGAGCAGTTTGCTTGGAGGTGTGTTTTTCAGCTTTTGGGTTTTGGCTCATTTGTATCCCTTTGCAAAAGGGCTAATGGGTAGAAGGGGTAGGACACCCACTATTGTATTTGTATGGTCAGGTCTAATATCAATCACTATCTCACTCCTTTGGGTTGCTATTGACCCGCCCTCTGGTAGCAGCAGTCAAATTGGAGGGTCATTCCAATTCCCTTGA 3426 0.4591 MCSVSPLDTFTEFLTEGAVVLFITMASKFKHGSSMVRNITQLSNDLDQEGENGSVGLATYTVHIPPTPDNQPMEISLERSSSRRAEDQYASSSLFTGGFNQLTRAHLKDKVIESESSHPQMTGAKGSSCAVPGCDGKVMTDERGLDVVPCECDYKICRDCYRDALRAGEGICPGCKEPYNEQEVKSQTLPLPPSARINKMERRLSLMKSGTLTRSQTNEFDHAQWLFESKGSYGYGNAMWPKESEPDASSVSGSDWMGGDPNVFNEKQWKPLTRKLSISAAILSPYRLIIFVRLVILVFFLKWRVQNPNDDAIWLWGMSVVCEIWFAFSWVLDQFPKLFPVNRFADLDVLKEKFETPNPTNPTGKSDLPGVDMFVSTADPEKEPPLVTANTILSILAADYPVEKLSCYVSDDGGALLTFEAMAEAASFANLWVPFCRKHEIEPRNPESYFNLKRDPYKNKVRSDFVRDRRRVKREYDEFKVRINGLPDSIRRRSDAYNASQEIKAMRKQRENGNEEPMENLKIPKATWMADGTHWPGTWTNAAPENSRGDHASIIQVMLKPPSDEPLTGTASDSNALDFTEVDIRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSQAMREGMCFMMDRGGDRLCYVQFPQRFEGIDPNDRYANHNTVFFDVNMRALDGIQGPVYVGTGCLFRRTALYGFDPPRNKEETGWFGRKNKKSSTVASVSEAGAEEQSLRNNDIEDEEMMTAFVPKKFGNSSLLVDSIRVAEFQGLPLADHSSIKYGRPPGALTLPRDPLDAATVAEAINVISCWYEDKTEWGIRIGWIYGSVTEDVVTGYRMHNRGWRSIYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASSRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFTDQFIVQSLQVNFLVYLLGITLSLVILAVLEIKWSGIALEEWWRNEQFWLIGGTSAHLAAVLQGLLKVMAGIEISFTLTSKSAGDDENDEYADLYVLKWSSLMIPPITIMMVNLIAIAVAVSRTIYSEDRQWSSLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVFVWSGLISITISLLWVAIDPPSGSSSQIGGSFQFP 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00549 1141 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 572 725 IPR029044 -
Phco4g00549 1141 SUPERFAMILY RING/U-box 119 185 - -
Phco4g00549 1141 FunFam Cellulose synthase-like protein D3 112 190 - -
Phco4g00549 1141 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 269 1110 - -
Phco4g00549 1141 Pfam Cellulose synthase 371 1129 IPR005150 GO:0016020|GO:0016760|GO:0030244
Phco4g00549 1141 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 189 IPR013083 -
Phco4g00549 1141 FunFam cellulose synthase-like protein D3 576 713 - -
Phco4g00549 1141 SUPERFAMILY Nucleotide-diphospho-sugar transferases 386 725 IPR029044 -
Phco4g00549 1141 Pfam RING/Ubox like zinc-binding domain 131 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00549 Phco-Chr4 4022236 4026486 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00549 4 4022236 4026486 Phco4g00549 4 4022236 4026486 ECH