Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00526 ATGAGCTTTCAGGACATCGAGGCTGGCCGGCCTTTCGCTTCCCGGCACAACCTGATCAACGGCAAACAAGACCCTACGCATGCGGTGGCTTCCGGCGTGTTTCAGATCAACACCGCCGTCTCCACGTTCCAGCGACTCGTCAATACCCTCGGAACCCCCAAGGACACGCCCGAACTCCGCGAGAAGCTGCATAAGACAAGACTGCATATTGGACAATTGGTGAAGGATACTTCGAATAAACTTAAGCAAGCTAGTGAGATTGATCACAATGCTGAAGTTAATGCGAATAAGAAGATAGCAGATGCTAAGCTTGCAAAAGATTTTCAGGCGGTGTTGAAAGAGTTTCAGAAGACTCAGCGTCTTGCAGCTGAGAGGGAAACAGCTTATACATCTTTTGTTCCACAAGCAGTTCTTCCATCCAGCTATACAGCTGGCGAAATAGCCATTAGTTCTGATAAGACTCCAGAAGAGCGGGCCCTTCTTGTGGAATCTAGAAGACAGGAGGTATTATTCTTAGATAATGAGATTGCATTTAATGAGGCTATCATTGAGGAAAGAGATCAAGGCATTCAAGAAATCCAGCAGCAAATTGGTGAAGTGAATGAGATTTTCAAAGATCTTGCTGTGCTTGTCCATGAGCAAGGAACAATGATTGATGATATTGGGTCCAATATTGAGCATTCTCATGAAGCAACTGTACAAGCAAAATCTCAACTTGCCAAAGCATCAAAGACGCAAAGATCAAATTCATCTTTGACGTGCTTGCTTTTGGTGATATTTGGGATCGTGCTTCTAATCGTCATCATTGTCCTTGCTGCTTAG 822 0.4477 MSFQDIEAGRPFASRHNLINGKQDPTHAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSNKLKQASEIDHNAEVNANKKIADAKLAKDFQAVLKEFQKTQRLAAERETAYTSFVPQAVLPSSYTAGEIAISSDKTPEERALLVESRRQEVLFLDNEIAFNEAIIEERDQGIQEIQQQIGEVNEIFKDLAVLVHEQGTMIDDIGSNIEHSHEATVQAKSQLAKASKTQRSNSSLTCLLLVIFGIVLLIVIIVLAA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00526 273 Pfam SNARE domain 216 268 IPR000727 -
Phco4g00526 273 SMART SynN_4 13 127 IPR006011 GO:0016020
Phco4g00526 273 ProSitePatterns Syntaxin / epimorphin family signature. 186 225 IPR006012 GO:0005484|GO:0006886|GO:0016020
Phco4g00526 273 FunFam Syntaxin-22 like 173 273 - -
Phco4g00526 273 Gene3D - 20 133 - -
Phco4g00526 273 PANTHER SYNTAXIN 28 265 IPR045242 -
Phco4g00526 273 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 180 242 IPR000727 -
Phco4g00526 273 Pfam Syntaxin-like protein 30 129 IPR006011 GO:0016020
Phco4g00526 273 Gene3D - 174 273 - -
Phco4g00526 273 SMART tSNARE_6 175 242 IPR000727 -
Phco4g00526 273 CDD SynN 28 147 IPR006011 GO:0016020
Phco4g00526 273 FunFam Syntaxin-22 like 20 133 - -
Phco4g00526 273 SUPERFAMILY t-snare proteins 23 235 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00526 Phco-Chr4 3785264 3788065 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00526 4 3785264 3788065 Phco4g00526 4 3785264 3788065 ECH
Phco4g00526 4 3785264 3788065 Phco8g00176 8 1545211 1548681 PCT