Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00515 ATGTGGCTGCTGGGATTCGAGCCCAGGGTTTCTTCCAAAGCTCTCTTCTTTCTGGAACAACTTCTTCACAGATTTCCGATTCATTCTTTTCAATCCAATTTACCAATGGGCAAGAAGAAACCGAAGGACCCGCAACAAACCTCTCAAACCGACACTGTTTCATCCCCTTCCAGCATTTTCGACAAGCTATTCGGCAACGGGCCGGAACAGGGCACTGCAACCGCCGCCTCTCTATTTTCCGACGACAACCCCTTTCGGAGAAAACCTGCTTCACTTTCCGACACAACCAACCACGCTCAAATCCCTTACAACGGCGACGCCGACAATCGCGATGCCGGCGATGAGAAGAAGCGGAAGAGGAACAAAGAGATAAGCCCAGCCCTTGATCCAGTTTCTGTAACTGAAGCTTTGAAGAAATCGGAGAAGAGGAAACGCGTTACCGATGAAGGAAGAGAAGGAGGCCTTGATTTGGGTGCAGAAGCAATTGGGAAAAGGAAGAGGAAAAGGGATGAAGTTGAAAGAGAGTGGGAGGAGAAGAGATATGGGCTGGTGGAGGAAGTTGAAAAGGAAGGGATTGAGAATAAAACTGTTGGGAACAAGAGGAAGACGTTGGATGATCCAGCTGATACGATGGTTTCAAAGGAGGGTTTTGATGACGAGGATAAGCTTCTGAGGACTGTCTTTGTTGGGAATTTGCCTCTCAAGGTGAAAAAGAAGATACTGTTGAAGGAGTTTAAGAAGTTTGGTGAGGTAGAGTCTGTGAGGATTCGTTCTGTTCCAATACAAGATACCAAGAAACCTAGAAAGGGAGCTATCCTTGCGATGAAAATAAATGATGCTGCTGATAGTGTACATGCATACATTGTTTTCAAAACCGAGCAATCGGCTCAGGCTTCTTTGTCACACAACATGTCACTGGTTGAAGGAAATCACATTCGTGTTGATAGGGCTTGTCCACCCCGCAAGAAACATAAAGGCGAAAGTGTTCCTCTTTATGACAACAAGAGAACTGTTTTTGTGGGCAACCTCCCATTTGATGTGAAGGATGAAGAGCTTTATCGGTTATTTTGTGGTATATCCAACCTGGAATCAAGTGTAGAAGCTGTCAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGTATTGCTTATGTGCTATTTAAAACAAAGGAAGCTGCTAAATTTGTTGTTAAGAAAAGGAAGTTGAAGCTTCGAGACCGAGAGTTGAGACTCTCTCATGCCAAAGCAGATGCTACCCCATCTAAAAGGCCAAACCCATCATCAACACAAGCTCCTACCCCATCTAAACGGCCAAACCCATCATCAACACGAGCTCCTACCCCTTTTAAAAGGCCAAACCCATCATCAGCACAAGCTCCTGGTACTCCTGCAAAGAAATTTTCTGTGGCTTCACGGTCTCCTTCTAGCAGTATTAACAGGTCAAACAGAAAAACCAATGCATCTTATCAGGGTCTACGTGCAACCAAATCAGATGTGCACAAGAAAACCCAAGGTGGAGAAAAGCCAAAAGAACGCCAGACAAAGAGGCCTTCAGTGGCTGCCAGAAAGGCTAAAGCAAAATTGCACGTGGAGAGTGGTGCACCAAAACAAGCAGGGATAAAACGCAAGCTTGATAGTCGTACTCCAGACAGTTCCCTGCGTAATAAGAAAGTAAAAAAGAACAGGTAG 1692 0.4527 MWLLGFEPRVSSKALFFLEQLLHRFPIHSFQSNLPMGKKKPKDPQQTSQTDTVSSPSSIFDKLFGNGPEQGTATAASLFSDDNPFRRKPASLSDTTNHAQIPYNGDADNRDAGDEKKRKRNKEISPALDPVSVTEALKKSEKRKRVTDEGREGGLDLGAEAIGKRKRKRDEVEREWEEKRYGLVEEVEKEGIENKTVGNKRKTLDDPADTMVSKEGFDDEDKLLRTVFVGNLPLKVKKKILLKEFKKFGEVESVRIRSVPIQDTKKPRKGAILAMKINDAADSVHAYIVFKTEQSAQASLSHNMSLVEGNHIRVDRACPPRKKHKGESVPLYDNKRTVFVGNLPFDVKDEELYRLFCGISNLESSVEAVRVVRDPHLNVGKGIAYVLFKTKEAAKFVVKKRKLKLRDRELRLSHAKADATPSKRPNPSSTQAPTPSKRPNPSSTRAPTPFKRPNPSSAQAPGTPAKKFSVASRSPSSSINRSNRKTNASYQGLRATKSDVHKKTQGGEKPKERQTKRPSVAARKAKAKLHVESGAPKQAGIKRKLDSRTPDSSLRNKKVKKNR 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00515 563 MobiDBLite consensus disorder prediction 135 157 - -
Phco4g00515 563 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 319 495 - -
Phco4g00515 563 MobiDBLite consensus disorder prediction 408 563 - -
Phco4g00515 563 MobiDBLite consensus disorder prediction 31 157 - -
Phco4g00515 563 MobiDBLite consensus disorder prediction 89 103 - -
Phco4g00515 563 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 319 IPR000504 GO:0003723
Phco4g00515 563 SUPERFAMILY RNA-binding domain, RBD 329 427 IPR035979 GO:0003676
Phco4g00515 563 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 336 417 IPR000504 GO:0003723
Phco4g00515 563 MobiDBLite consensus disorder prediction 42 61 - -
Phco4g00515 563 MobiDBLite consensus disorder prediction 496 557 - -
Phco4g00515 563 MobiDBLite consensus disorder prediction 108 125 - -
Phco4g00515 563 SUPERFAMILY RNA-binding domain, RBD 218 325 IPR035979 GO:0003676
Phco4g00515 563 MobiDBLite consensus disorder prediction 422 439 - -
Phco4g00515 563 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 338 411 IPR000504 GO:0003723
Phco4g00515 563 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 227 281 IPR000504 GO:0003723
Phco4g00515 563 SMART rrm1_1 337 413 IPR000504 GO:0003723
Phco4g00515 563 SMART rrm1_1 226 315 IPR000504 GO:0003723
Phco4g00515 563 MobiDBLite consensus disorder prediction 449 494 - -
Phco4g00515 563 Gene3D - 221 325 IPR012677 -
Phco4g00515 563 Gene3D - 331 424 IPR012677 -
Phco4g00515 563 CDD RRM2_RBM34 337 413 IPR034221 -
Phco4g00515 563 CDD RRM1_RBM34 225 315 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00515 4 3684208 3689116 Phco4g00515 4 3684208 3689116 ECH