Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00510 ATGGCTACTATAGAATCTGCCCTCACCCTGTTCGCACCTCAACGATTTTCGTATAACTATCGTTCGTCTGCAAAACCACCTCACTCCATTAAGCTCCATGATTCCACTTCCCTTTTCTTCTCTTCCAATGCCTCTTTCAAAACTGCAAGACTCTGCTTCCGGCTATGCTCTGCTCTGCAAGAGCTACCCACAACAGAGAAAACACCTGGCCCAACCCAACCAACTGACAACCTCACCAAGCTCTACGTCGCTAACTTGTCTTGGTCTCTGTCGCCGGCTGACATCAAGGGCATCTTTGCCCAATGTGGAACCGTAACAGACGTCGAGATAATAAGGAACAGAAAAGGGAGGCACATGGGATATGCCTTCGTTACTATGGATTCCGGGGAAGAGGCTCAGGTTGCTGTTGATAAATTTGACTCATATGAGTTATCAGGACGGATAATAAGGGTAGAGCTTGCAAAGACATTCAAGAAACCTCCTCCTTCTCCTCCTCCACCTCCTCCACCTCCTCGAAGTCGCTACCCTAGAGAGACACGTCATGTACTTTATGTATCCAACCTTGCATGGAAAGCAAGATCTACCCATCTCAGGCAAGTCTTCACCGAAAATTTCAAAACACCAGTTTCCGCCAGGGTTGTCTTTGATAGCCCTGCTAAACGATCAGCTGGGTACGGATTTGTTTCTTTTCTTACTAAGGAGGATGCAGAGGCTGCCATTTCTACTGTGGATGGGAAGGAGATAATGGGACGACCGCTTCGCCTAAAATTCAGTGAAAAGAAAGATAATGAAGCTGGAAGTGAAAAAGAGGAAGACCAAATTAAAGATGCTGGAAGTGAAGATGAAGACCAAGGTTCTGTTGCTCAACCAGAAGAGTCATAA 882 0.4637 MATIESALTLFAPQRFSYNYRSSAKPPHSIKLHDSTSLFFSSNASFKTARLCFRLCSALQELPTTEKTPGPTQPTDNLTKLYVANLSWSLSPADIKGIFAQCGTVTDVEIIRNRKGRHMGYAFVTMDSGEEAQVAVDKFDSYELSGRIIRVELAKTFKKPPPSPPPPPPPPRSRYPRETRHVLYVSNLAWKARSTHLRQVFTENFKTPVSARVVFDSPAKRSAGYGFVSFLTKEDAEAAISTVDGKEIMGRPLRLKFSEKKDNEAGSEKEEDQIKDAGSEDEDQGSVAQPEES 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00510 293 SUPERFAMILY RNA-binding domain, RBD 161 263 IPR035979 GO:0003676
Phco4g00510 293 SMART rrm1_1 80 152 IPR000504 GO:0003723
Phco4g00510 293 SMART rrm1_1 182 256 IPR000504 GO:0003723
Phco4g00510 293 SUPERFAMILY RNA-binding domain, RBD 71 178 IPR035979 GO:0003676
Phco4g00510 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 79 156 IPR000504 GO:0003723
Phco4g00510 293 MobiDBLite consensus disorder prediction 158 173 - -
Phco4g00510 293 MobiDBLite consensus disorder prediction 251 282 - -
Phco4g00510 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 260 IPR000504 GO:0003723
Phco4g00510 293 MobiDBLite consensus disorder prediction 251 293 - -
Phco4g00510 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 81 149 IPR000504 GO:0003723
Phco4g00510 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 254 IPR000504 GO:0003723
Phco4g00510 293 Gene3D - 161 273 IPR012677 -
Phco4g00510 293 Gene3D - 56 160 IPR012677 -
Phco4g00510 293 PANTHER OS02G0815200 PROTEIN 38 260 - -
Phco4g00510 293 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00510 Phco-Chr4 3645614 3649647 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00510 4 3645614 3649647 Phco4g00510 4 3645614 3649647 ECH