Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00498 ATGTGTTTCTCACTCTCTTCACCCGCTAAGTCCGCAGAGGGCCCAGTGGAGGTTTCTCCCCCAACGAATTTCTTTCCCGAAACTCTATGTCCCTCAGAATCGGTCGGCGGTTGTTGCGATCATTCTGGTCAGTTATCGGCCGTCGGCCAATCTACTCTTCTGGTGGGTTACGGTGTTGGCGGGGAGGGCGCTGCACAAGAGGATTCTAATACGGCCTCGCAGTTCCGGCAGCTCAACAACGATTCGACTTTGCCCCTGGCTTCGTGTTCACCCGTCTCGGCGGTGGCGCCGGAATCGTGGGTTACTACCCAAGGGAACTGGCTCTTAGACGAGAACGAGGGTTCAATGGGTACAGAATCTGTCTATGAATTTGGGCCTTCTAACATGGGAGCAGGGCTTTCGAATCTTGGCAATACGTGTTTTCTAAATGCTATTCTGCAATGCTTTACACATACAGTGCCTCTAGTGCAGGGTATTCGTGCGTGTACTCATAATTTCCCTTGTGATGGTCATATGGATCGCTTCTGTGTTATCTGCACTTTTCGTGACCAGGTTGAACGTTCCTTGGCTGCTTCTGGACGGACTCTCTCACCTTTGAAATTTGTGAACAATTTGAGCTATTTTTCTTCTGGATTTAGAAGATATCAGCAGGAGGATGCCCATGAATTCATGCAGTGTGCCTTAGATAAACTGGAAAGGTGTTTCCTAGATTTGAAGAAGACTGATTTAAATTTTGAAGAGGATAATATTGTACAGAAAGTATTTGGAGGTCGTCTCATTAGCAAACTTCAATGTTGTAGCTGTGGTCGCACTTCAGACACTTATGAGCCATTAATTGACATGAGTTTAGAGATAGAAAACGTAGATTCTCTTCCAAGTGCTCTGGAATCTTTTACTAAGGTGGAAAAGATTGATGCAAACTTTAGATGTGATAGCTGTAAGGAAGAAGTGTCCATGGAGAAGCAGCTTATGTTGGATATGACACCGTCAGTTGCAGCATTTCATTTAAAGAGATTTAAGGCAGATGGGATTCTTGTTGAGAAGATTGATAAGCATATTGATTTCCCATTGGAGTTAGACTTGCAGCCTTACACCATTTCTAATCAAAACAATGATGTACTGATGAAATATGATTTATATGCCATTGTTGTGCATACTGGTTTTTCTTCTACTTCAGGGCATTACTTCTGCTTCGTTCGCTCTGGTCCAGACACATGGCACAAGTTGGATGATTCTATGGTTACTGAGGTATCAGGAGACTCTGTACTGTCTCAGGAAGCGTACATACTGTTTTATGCAAGACAGGGTACTCCGTGGTTTTCTAGTATTATGGAATCTCAAAAACAATGCCTGGATCCAAATATTTCTAGTACATCTCCTACATCGGTTTTAGACATTGGTGATGGCATATCTAAATCAAACCCTAATTTAATTCCAAGTACTGAAAGAGGTGGGGCTGGTGAATCCAAAGGATGTTCTGAGCCTGGGTTTGATTATTTTATTCCAGATGAACCTACTTTTTCTGAAACAAATGACGCTAAAGATGCTACTCATGGCCGTGGACAATTTCTCTGCGGGCCAAATCAGGAAAGTATTTATTTCCATAGCAGCTCTAAAGATGTTGAAACCCAAAAGTTGTTCAGGAACAGGGTGACCTTGGATGGTCGTCCCATGTTTGATGGAAAATCATATACTGAGAATGCTAGTCTTGATAATAACTATGACTGTGAGGAAGTTGTTGATTTTAGAGAGAGTGGTGGTGCTTGTTCATTATCTCTGCCTTTGCCTCCGCCCACCTCCCCTCTCGATAATGCTTCAGATAAATTTCGTATCTCACGTGATAATTCGAAGAAGGAGAGCAAGCAGAGCCGGAAAAGACCACTCAATCAGTGTAACGAGAATCCTGAACGACGAGAAGCTGTGAAATATCTTAATAAGACTGGTCCAAGGAGAGAGGCACTCTTGAAATATGTTGCTCGGGATGAAGTTTCAGACAAGAGAAGAAAAATGGATTCATTGCAGTGTAAGAAAACCACATCTCTTGATCGCAAAAAATCAAACCAAACATCTGTCAGCCGCCCTGTGGCAGCTGGAATTTCACAGTGA 2106 0.4321 MCFSLSSPAKSAEGPVEVSPPTNFFPETLCPSESVGGCCDHSGQLSAVGQSTLLVGYGVGGEGAAQEDSNTASQFRQLNNDSTLPLASCSPVSAVAPESWVTTQGNWLLDENEGSMGTESVYEFGPSNMGAGLSNLGNTCFLNAILQCFTHTVPLVQGIRACTHNFPCDGHMDRFCVICTFRDQVERSLAASGRTLSPLKFVNNLSYFSSGFRRYQQEDAHEFMQCALDKLERCFLDLKKTDLNFEEDNIVQKVFGGRLISKLQCCSCGRTSDTYEPLIDMSLEIENVDSLPSALESFTKVEKIDANFRCDSCKEEVSMEKQLMLDMTPSVAAFHLKRFKADGILVEKIDKHIDFPLELDLQPYTISNQNNDVLMKYDLYAIVVHTGFSSTSGHYFCFVRSGPDTWHKLDDSMVTEVSGDSVLSQEAYILFYARQGTPWFSSIMESQKQCLDPNISSTSPTSVLDIGDGISKSNPNLIPSTERGGAGESKGCSEPGFDYFIPDEPTFSETNDAKDATHGRGQFLCGPNQESIYFHSSSKDVETQKLFRNRVTLDGRPMFDGKSYTENASLDNNYDCEEVVDFRESGGACSLSLPLPPPTSPLDNASDKFRISRDNSKKESKQSRKRPLNQCNENPERREAVKYLNKTGPRREALLKYVARDEVSDKRRKMDSLQCKKTTSLDRKKSNQTSVSRPVAAGISQ 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00498 701 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 377 395 IPR018200 GO:0004843|GO:0006511
Phco4g00498 701 Pfam Ubiquitin carboxyl-terminal hydrolase 132 432 IPR001394 GO:0004843|GO:0016579
Phco4g00498 701 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 131 435 IPR028889 -
Phco4g00498 701 MobiDBLite consensus disorder prediction 660 701 - -
Phco4g00498 701 SUPERFAMILY Cysteine proteinases 129 434 IPR038765 -
Phco4g00498 701 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 132 147 IPR018200 GO:0004843|GO:0006511
Phco4g00498 701 MobiDBLite consensus disorder prediction 591 637 - -
Phco4g00498 701 Gene3D Cysteine proteinases 127 442 - -
Phco4g00498 701 MobiDBLite consensus disorder prediction 684 701 - -
Phco4g00498 701 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 83 435 - -
Phco4g00498 701 MobiDBLite consensus disorder prediction 660 683 - -
Phco4g00498 701 MobiDBLite consensus disorder prediction 607 637 - -
Phco4g00498 701 FunFam Ubiquitin carboxyl-terminal hydrolase 20 127 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00498 Phco-Chr4 3549862 3553374 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00498 4 3549862 3553374 Phco4g00498 4 3549862 3553374 ECH