Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00414 ATGCCAAGCAAGGAGGATTCACCATTAGAAGAAGCAAATCTTCCACTGCTGGAACCTCACCCTCTAACAGATGAAAGAGATGATGAACAAGACCAAAAACTGGCACCAAGGTTTTGGATCGAGTCAAAGAAGCTTTGGCACATAGTAGGCCCTTCAATTTTGAGCCGCGTTTTATCCTATTCCATGTTAGTCATCACCCAGGCTTTCGCTGGCCGTCTTGGTGACCTCGAACTCGCCGCCATCTCCATTGCCAATAATGTCGTCGTTGGCTTTGACTTTGGCCTCTTGTTGGGTATGGCAAGTGCCTTGGAAACGCTATGTGGGCAAGCCTTTGGAGCGAAAAAGTACCACATGTTAGGCATTTACATGCAGCGTTCGTGGATCGTTCTTTTCATATGCTGTATCTTGCTTTTGCCCCTGTACTTATTTGCCTCGCCGGTGTTGAAGCTGTTGGGGCAGCCCGATGAGCTGGCGGAGTTATCCGGTAAGGTGTCGATTTGGATGCTACCGGTGCACTTCGCGTTTGCGTTTCAGTTTCCTCTGCAGAGGTTCTTGCAGTGCCAGCTGAAGACTGCGCCTATTGCGTGGGTGTCTCTGGTGGCGCTCTTGGTGCATGTGTTTGTGACCTGGTTGTTCGTGTTCAAGCTCGAGTTCGGAGTTATTGGCGCTGCTGCTACCATTAACTTCTCGTGGTGGGTGCTCACCTTGGGGCTTTTTGGGTACAGCGTTTGGGGTGGGTGCCCTCACACTTGGACTGGTTTTTCAGTTGAAGCTTTCTCTGGGCTTTGGGACTTTGTCAAACTCTCTGCTGCTGCTGGAGTCATGCTCTGCTTGGAGAATTGGTATTACAAAATTCTTATAGTGATGACGGGGAACCTTGAGAATGCAGAGATTGCTGTGGATGCTTTATCCATATGTATGACCGTCAACAGCTTGGAGATGATGATTCCTCTCGCATTCTTTGCTGCAACAGGAGTGAGAGTTGCAAACGAGCTTGGAGCTGGGAATGGAAAAGGAGCCAAGTTTGCTACTACAGTATCTGTGGTAACATCGGTTATTATAGGACTCTTCTTCTGGATGTTGATTTTGATATTGCATGATAAATTCGGCTACATATTCTCTAATAGCAAACCTGTTCTTGACCAAGTCAACGACCTTTCTCTTCTATTAGCCTTCACAATTCTGCTCAACAGTGTTCAACCAGTTCTCTCAGGAGTGGCTGTAGGATCAGGTTGGCAATCATATGTGGCATACATAAACTTGGGTTGCTACTATATTATTGGGGTGCCTCTTGGATTTTTGATGGGCTGGGTCTTCAAACTAGGAGTTATGGGAATCTGGGCGGGGATGATTTTTGGTGGCACAGCTACTCAGACATTAATATTGAGCATCATTACCATTAAGTGCGACTGGGACAAAGAGGCTGAGATCGCAAAAATGCGTTTAACCAAGTGGGCAGATCCAAAGCAGGAACTCAACTAA 1482 0.471 MPSKEDSPLEEANLPLLEPHPLTDERDDEQDQKLAPRFWIESKKLWHIVGPSILSRVLSYSMLVITQAFAGRLGDLELAAISIANNVVVGFDFGLLLGMASALETLCGQAFGAKKYHMLGIYMQRSWIVLFICCILLLPLYLFASPVLKLLGQPDELAELSGKVSIWMLPVHFAFAFQFPLQRFLQCQLKTAPIAWVSLVALLVHVFVTWLFVFKLEFGVIGAAATINFSWWVLTLGLFGYSVWGGCPHTWTGFSVEAFSGLWDFVKLSAAAGVMLCLENWYYKILIVMTGNLENAEIAVDALSICMTVNSLEMMIPLAFFAATGVRVANELGAGNGKGAKFATTVSVVTSVIIGLFFWMLILILHDKFGYIFSNSKPVLDQVNDLSLLLAFTILLNSVQPVLSGVAVGSGWQSYVAYINLGCYYIIGVPLGFLMGWVFKLGVMGIWAGMIFGGTATQTLILSIITIKCDWDKEAEIAKMRLTKWADPKQELN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00414 493 NCBIfam MATE family efflux transporter 51 447 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco4g00414 493 MobiDBLite consensus disorder prediction 1 28 - -
Phco4g00414 493 Pfam MatE 273 434 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco4g00414 493 Pfam MatE 51 211 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Phco4g00414 493 CDD MATE_eukaryotic 41 476 IPR045069 GO:0042910|GO:1990961
Phco4g00414 493 PANTHER MULTIDRUG RESISTANCE PROTEIN 34 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00414 Phco-Chr4 2770273 2774663 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00414 4 2770273 2774663 Phco4g00414 4 2770273 2774663 ECH