Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00388 ATGGAATGGCCTGCGTGCACGGACGAATATGAAAAGCTTGTGATACGGATGAGCACTCCCAGGGTTGTTATTGACAATTCCGTGTTCTCTTCAGCTACTCTAGTCAAGGTTGACAGCGCTAGAAGGCATGGTATTTTATTGGATGCTGTACAGGTGCTCACTGACCTGGATCTTTCTATAAAGAAAGCCTATATTTCTGCTGATGGCAAGTGGTGTATGGATGTTTTTCATGTCACTGATCAAAATGGAAACAAGATAACGGACGAAAGCGTTTTAAAATATATTGAGCAGTCACTTGGGAGCATTCACTACTATGGGAGAACCAACAGTTCTAATGGTCTCACTGCGCTGGAATTGACAGGAACTGACCGAGTTGGTCTTTTATCGGAGGTGTTTGCCGTACTGGCTGATCTTCAATGTGATGTGGTTGAGGCCAAGGTTTGGACTCACAATGGGCGTATTGCTTCCTTAATTTATGTAAAAGACTCTAGTTCTGGGTCTGCTATTGAGGACTCTCAGAAAATTAATAAGATTGAATTGCGCTTAAGAAATGTTTTGAAGGGAGACAATGACATCAGAAGTGCAAAAATTTCTGTTTCTATGGCTGCGATGCACACTGAAAGAAGGCTACATCAAATGATGTTCACGGACCGTGATTATGAGAGGACTCCCATTCTTGAGGTTACTTCTGATAGCCCAGTGGTGACGGTTCAGAATTGGGCAGGAAGGGGCTATTCAGTCGTGAATGTTCAGTGCAAAGATCGAACCAAGCTTTTATTCGATGTTGTATCCAATTTGACAGACATGGAATATGATGTATTTCATGCAACTATTAACACAAATGATGACCGAGCATACTTGGAGTTTTACATAAGACACAAAGATGGCACTCCAATTAACTCAGAACCAGAGCGTCAACGTGTAATTCAATGCTTAAAAGCTGCTGTAGAGAGAAGGGCATCTGAGGGTGTTCGACTAGAGTTATGCAAAGAAGACAGGCAGGGGCTTCTAGCAGAAGTAATGAGAACTTTCCGCGAGAATGGGCTCAATGTGACCAGGGCTGAGATATCCACCGTAGGGAATATGGCTACAAATATATTCTACGTAACGGATGCGGTTGGAAATCCAGCTGATTCAAAAATTATCGAATCTGTTAGGCAGAAAATTGGGTTAAGCAATTTAGAAGTGAAGGAATTGCCGTTGATATACCATCAGGAGATACAGAGAGAGGATGAAGCGGTTGGAATTGGTGGGGCAGTGTTGTTGTCCATAGGGAGTCTTGTGAGAAGAAATCTGTATAATTTGGGATTAATCAAATCCTGTTCCTGA 1329 0.4244 MEWPACTDEYEKLVIRMSTPRVVIDNSVFSSATLVKVDSARRHGILLDAVQVLTDLDLSIKKAYISADGKWCMDVFHVTDQNGNKITDESVLKYIEQSLGSIHYYGRTNSSNGLTALELTGTDRVGLLSEVFAVLADLQCDVVEAKVWTHNGRIASLIYVKDSSSGSAIEDSQKINKIELRLRNVLKGDNDIRSAKISVSMAAMHTERRLHQMMFTDRDYERTPILEVTSDSPVVTVQNWAGRGYSVVNVQCKDRTKLLFDVVSNLTDMEYDVFHATINTNDDRAYLEFYIRHKDGTPINSEPERQRVIQCLKAAVERRASEGVRLELCKEDRQGLLAEVMRTFRENGLNVTRAEISTVGNMATNIFYVTDAVGNPADSKIIESVRQKIGLSNLEVKELPLIYHQEIQREDEAVGIGGAVLLSIGSLVRRNLYNLGLIKSCS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00388 442 SUPERFAMILY ACT-like 30 97 IPR045865 -
Phco4g00388 442 SUPERFAMILY ACT-like 321 395 IPR045865 -
Phco4g00388 442 Pfam ACT domain 117 170 IPR002912 -
Phco4g00388 442 Pfam ACT domain 329 385 IPR002912 -
Phco4g00388 442 ProSiteProfiles ACT domain profile. 325 404 IPR002912 -
Phco4g00388 442 CDD ACT_ACR_3 245 319 - -
Phco4g00388 442 CDD ACT_ACR_2 115 188 - -
Phco4g00388 442 CDD ACT_ACR_4 323 394 - -
Phco4g00388 442 ProSiteProfiles ACT domain profile. 116 200 IPR002912 -
Phco4g00388 442 Gene3D - 321 395 - -
Phco4g00388 442 SUPERFAMILY ACT-like 245 313 IPR045865 -
Phco4g00388 442 ProSiteProfiles ACT domain profile. 34 110 IPR002912 -
Phco4g00388 442 SUPERFAMILY ACT-like 111 173 IPR045865 -
Phco4g00388 442 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 398 IPR040217 -
Phco4g00388 442 CDD ACT_ACR_1 32 103 - -
Phco4g00388 442 Gene3D - 114 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00388 Phco-Chr4 2543002 2545430 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00388 4 2543002 2545430 Phco4g00388 4 2543002 2545430 ECH