Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00387 ATGGTTGAAAGTGTGGCGGGAAGAGACGTGGTTCAGGCCATCCACCCTAAAAAGGCGTGGGGCACACCACACCACACCACACAACACACTGCGTTTGTCCCAAACTGTGGCATTAAAATTTGTTGTGAAATGGCTTGTGCGCACTACCATCTTTGCCCCGGGAGTCTGGTATTCCGGTCCGACACTGGAGCTCGTCTGGGTCAGACTTTCACGCTAAAGAGTCCTCAAAGTTTATGGCTTGGAACTAAACTTAGGGGTTTATCGTGCAGTCTCAATTTCAGAAATCACGTGTCTGTTTCCCGGCACCGGCCGCTCCCCGCCACCGTCTCCCTCAGCCTCCCCACCGCAAAGCCAGAGCGTGCTTCTCCTGGCCAAGAATTTCCTAAATGGTCTTCCAAGGCTATAAAATCGTTTGCAATGTCTGAATTGGAGGCGAGAAAGCTTAAGTATCCTACTACCGGCTCTGAAGCCCTTCTCATGGGGGTTCTCATCGAGGGTACTAATTTAGCTGCCAAGTTTTTGCGAGCCAATGGAATTACACTTCTCAAGGTTCAAGATGAAACAGTGAAGTTACTTGGAAAAGGTGATTTGTTTTTCTTCAGCCCGGAGCATCCTCCACTGACTGATGAAGCTCAGAGAGCTCTTGATTGGGCTGTTGATCGAAAAGCAAAATCTGTTGATGGCGGGGAAATGACCACAGCGCACATACTTCTTGGTATCTGGTCCGAAGTGGATTCTCCTGGTTACAAGATTCTGTCCACCCTTGGCTTTAATGATGAAAAAGCTGAAGAGCTTGAGTCCTTAATATCTAATCCTGGATGTACGGATGATTGA 834 0.4844 MVESVAGRDVVQAIHPKKAWGTPHHTTQHTAFVPNCGIKICCEMACAHYHLCPGSLVFRSDTGARLGQTFTLKSPQSLWLGTKLRGLSCSLNFRNHVSVSRHRPLPATVSLSLPTAKPERASPGQEFPKWSSKAIKSFAMSELEARKLKYPTTGSEALLMGVLIEGTNLAAKFLRANGITLLKVQDETVKLLGKGDLFFFSPEHPPLTDEAQRALDWAVDRKAKSVDGGEMTTAHILLGIWSEVDSPGYKILSTLGFNDEKAEELESLISNPGCTDD 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00387 277 SUPERFAMILY Double Clp-N motif 129 262 IPR036628 -
Phco4g00387 277 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPT1, CHLOROPLASTIC 70 276 IPR044217 -
Phco4g00387 277 Pfam Clp amino terminal domain, pathogenicity island component 230 269 IPR004176 -
Phco4g00387 277 Pfam Clp amino terminal domain, pathogenicity island component 143 193 IPR004176 -
Phco4g00387 277 Gene3D - 129 277 IPR036628 -
Phco4g00387 277 ProSiteProfiles Clp repeat (R) domain profile. 127 272 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00387 Phco-Chr4 2528892 2538155 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00387 4 2528892 2538155 Phco4g00387 4 2528892 2538155 ECH