Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00377 ATGAGAGTGATAGTGCCTCTACAGGGGGTTGTTCAAGGCACAGGAGGTCTTTTCTGGGGTTCGGTCATTCCTTGTGCCCTCTTCTACTTTCTTCAACTCTTCTTCAAAACCAAGACACGTCACCACCAACCCCCACCCTCCCACAACCACAAGGAGGATTCCACCACCTTCCACCGCTCTCTCTCTCTCACTCCAAGGCACACCTCTGCCTCTGCTTACGTGTCCCCTCGAGCCAATTCCATAACCGCTGCTAACTCTTCTTACCATCTAGCTTTCAACAAGGTCGCTGATGATCCCTACCACGAAACTCATAATCCCGATGGTGTTATTCAACTTGCTTTACACCAAAACACCCTATCTCTTGATTTTATTCAAGATTGGATTCACTGCAACGGAAGCGCTGCTATATTGGGGACACCTCTCACCATTTCTAGGATTGTTCCCTACCAAACTCTCGAAGGATTGATGGAGCTTAAAGTGGCTGTGGCTGGTTTCATGTCTCAAGTTTTGGAAAAGCCGATTTTCTTCAACACTTCGCGAATGGTACTGACTGCAGGTGCCACCTCTGCCATTGAGATTCTGAGCTTCTGCCTAGCAGATCAGGGAAATGCATTCCTTGTTCCCACGCCTCTTAGCCCCGGTTTTGACGAGGTTGTAAAATGGCGCACTGGAGCTGAGATAGTACCTGTTCCCTGTCGCAGCGCTGATGACTTCAATTTAAGTATAACTTCACTTGAGAGAACCTTCAATCAAGCAAAGATGCGTGGTCAAAAAGTTCGTGGAATAATAATGACCAACCCCTCAGACCCTGCTGGCAAATTGTTGAATCGGGAAACACTGTTGGATCTTTTGGACTTTGCTAGAGAGAAGAACATTCACATAATCTCCAATGAAATGTTTGCAGGCTCTACTTATGGTAATGAAGAATTTGTGAGCATGGCAGAAATCATGCAGGCAGAAGATCATGATCGGGACAGAGTTCATATAGTGTTTGATTTATCCAATGAGCTTTCTGTTCCAGGTTTGAAGGCGGGTGTTATCTACTCCTACAATGACAATGTTGTGGCTGCTTCTACCAAATTGGCAAGATTCTCCACTGTTTCTGTCCCAACTCAAAGATTGCTTATCTCCATGCTTTCAGATACAACTTTTGTGCAAAAGTTTATTGAGGTTAACAGATTGAGGCTGCGGGAAATGTATAATGTATTTGTGACAGGGTTGAAGCAGTTGGGAATTGAGTGCACTAGGGGCAGTGGTGGTTTTTGCTGCTGGGCTGACATGAGCAGGTTGATTCGGTCTTACAGTGAAAAGGGGGAGCTTGAGCTGTGGGATAGATTGTTGAATGTTGTTAAGATCAATGTTACCCCGGGTTCCTCATGTCACTGTATTGAACCTGGATGGTTTCGTTTTTGTTTTGCTACATCAACTGAAAAGGATATTTCTGTAGTGATGGAACGGATTTGGAGAATTTCTGATTCAGCAAAGTGA 1488 0.4503 MRVIVPLQGVVQGTGGLFWGSVIPCALFYFLQLFFKTKTRHHQPPPSHNHKEDSTTFHRSLSLTPRHTSASAYVSPRANSITAANSSYHLAFNKVADDPYHETHNPDGVIQLALHQNTLSLDFIQDWIHCNGSAAILGTPLTISRIVPYQTLEGLMELKVAVAGFMSQVLEKPIFFNTSRMVLTAGATSAIEILSFCLADQGNAFLVPTPLSPGFDEVVKWRTGAEIVPVPCRSADDFNLSITSLERTFNQAKMRGQKVRGIIMTNPSDPAGKLLNRETLLDLLDFAREKNIHIISNEMFAGSTYGNEEFVSMAEIMQAEDHDRDRVHIVFDLSNELSVPGLKAGVIYSYNDNVVAASTKLARFSTVSVPTQRLLISMLSDTTFVQKFIEVNRLRLREMYNVFVTGLKQLGIECTRGSGGFCCWADMSRLIRSYSEKGELELWDRLLNVVKINVTPGSSCHCIEPGWFRFCFATSTEKDISVVMERIWRISDSAK 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00377 495 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 180 200 - -
Phco4g00377 495 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 358 381 - -
Phco4g00377 495 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 202 223 - -
Phco4g00377 495 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 143 159 - -
Phco4g00377 495 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 326 350 - -
Phco4g00377 495 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 256 280 - -
Phco4g00377 495 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 292 315 - -
Phco4g00377 495 PRINTS 1-aminocyclopropane-1-carboxylate synthase signature 112 138 - -
Phco4g00377 495 CDD AAT_like 149 487 - -
Phco4g00377 495 Gene3D Aspartate Aminotransferase, domain 1 98 486 IPR015422 GO:0003824
Phco4g00377 495 Gene3D - 132 381 IPR015421 GO:0003824
Phco4g00377 495 SUPERFAMILY PLP-dependent transferases 88 490 IPR015424 -
Phco4g00377 495 Pfam Aminotransferase class I and II 148 487 IPR004839 GO:0009058|GO:0030170
Phco4g00377 495 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 72 488 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00377 Phco-Chr4 2455774 2457978 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00377 4 2455774 2457978 Phco4g00377 4 2455774 2457978 ECH