Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00367 ATGGGCGAATCGTTCACTCCACCTTCTCCAATGTCCTCTTCCCAGCACAACCACGTCAAACGAATGTTAAACTCCAATCGCTTCAAGTCACCTTCCAAAACAATCTACTCCGACCGCTTCATACCAAGCAGATCCGCTTCCAACTTCGCTCTGTTTAACCTATCGCCGTCCACGGAAGACGGTTGTAGTTGCAGCCCCTATGGCAGCGCGCTGCGGAGTGCCTTGTTTGGACCTTCCACACCCGACAAATTCGAGAGCCCTAATATATTTCGTTTCAAATCGGAGACTCGACAGTCCATGCATTCTCTTTCTCACACTCCGTTTACATCCCACGATGTCCTTCTCTCTGGCTATGAGTACAATCATAAGCCCCTTAAGCGCCCTCGAAAGATTCCTCCCTCGTCTTTTAAGGTTCTGGATGCGCCGGCTCTGCAAGATGATTTTTATCTGAATCTCGTGGATTGGTCCTCCAGCAATGTCTTGGCTGTGGCTCTGGAAAACTCTGTTTATCTGTGGAATGCTTCTAGCAGCAAGGTAACTAAGCTATGCGATTTGGGGGCTGACGATTCCGTATGTTCAGTTGGCTGGGCTCCGCTTGGTACCTACTTGGCTGTTGGATCAAACAGTGGAAAAGTCCAGATTTGGGATGTGTCTCAAGGCAAGTCAATAAGAACTATGGAGGGTCATCGCCTACGTGTTGGGACCTTGGCCTGGAGTTCATCTCTCTTGTCTTCTGGTGGCCGGGATAAAAGCATTTACCAACGAGACATACGTGTACAAGAGGATTTTGTCAGTAAACTTTCTGGGCACAAATCAGAGGTTTGTGGACTAAAGTGGTCTTACGATAACCGTGAGTTAGCATCAGGTGGAAATGACAACAAGTTACTTGTTTGGAATCAAAACTCAACCCAGCCCATCCTGAAGTTCTGTGGGCATACAGCAGCTGTTAAAGCAATTGCGTGGTCTCCTCATGCAAATGGACTTCTTGCATCTGGAGGAGGTACTGCAGACCGAAGCATTCGTTTCTGGAATACAACCACAAACTCACAGTTAAACTGCATTGACACTGGAAGTCAGGTTTGTAATCTTGTCTGGTCTAAAAATGTGAATGAATTGGTAAGCACGCACGGCTACTCCCAGAATCAGATAATGGTTTGGAAATATCCCACCATGTCAAAGCTGGCAACTCTTACAGGCCATAGTTTCAGAGTTCTTTATCTTTCCATTTCTCCTGATGGACAGACTATTGTCACTGGAGCTGGAGATGAAACTCTAAGATTTTGGAATGTATTCCCTTCGCGGAAATCACAGAATACTGAGAGTGAAATTGGAGCATCCTCTTTTGGAAGATCTATCATCAGGTGA 1365 0.4637 MGESFTPPSPMSSSQHNHVKRMLNSNRFKSPSKTIYSDRFIPSRSASNFALFNLSPSTEDGCSCSPYGSALRSALFGPSTPDKFESPNIFRFKSETRQSMHSLSHTPFTSHDVLLSGYEYNHKPLKRPRKIPPSSFKVLDAPALQDDFYLNLVDWSSSNVLAVALENSVYLWNASSSKVTKLCDLGADDSVCSVGWAPLGTYLAVGSNSGKVQIWDVSQGKSIRTMEGHRLRVGTLAWSSSLLSSGGRDKSIYQRDIRVQEDFVSKLSGHKSEVCGLKWSYDNRELASGGNDNKLLVWNQNSTQPILKFCGHTAAVKAIAWSPHANGLLASGGGTADRSIRFWNTTTNSQLNCIDTGSQVCNLVWSKNVNELVSTHGYSQNQIMVWKYPTMSKLATLTGHSFRVLYLSISPDGQTIVTGAGDETLRFWNVFPSRKSQNTESEIGASSFGRSIIR 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00367 454 Pfam Anaphase-promoting complex subunit 4 WD40 domain 160 240 IPR024977 -
Phco4g00367 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 299 - -
Phco4g00367 454 PANTHER CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED 17 449 IPR033010 GO:0010997|GO:0097027|GO:1904668
Phco4g00367 454 Pfam WD domain, G-beta repeat 393 429 IPR001680 GO:0005515
Phco4g00367 454 Pfam WD domain, G-beta repeat 264 299 IPR001680 GO:0005515
Phco4g00367 454 Pfam WD domain, G-beta repeat 304 344 IPR001680 GO:0005515
Phco4g00367 454 SMART WD40_4 219 256 IPR001680 GO:0005515
Phco4g00367 454 SMART WD40_4 390 429 IPR001680 GO:0005515
Phco4g00367 454 SMART WD40_4 132 173 IPR001680 GO:0005515
Phco4g00367 454 SMART WD40_4 260 299 IPR001680 GO:0005515
Phco4g00367 454 SMART WD40_4 176 216 IPR001680 GO:0005515
Phco4g00367 454 SMART WD40_4 347 387 IPR001680 GO:0005515
Phco4g00367 454 SMART WD40_4 302 344 IPR001680 GO:0005515
Phco4g00367 454 Gene3D - 125 433 IPR015943 GO:0005515
Phco4g00367 454 FunFam FIZZY-related 2 isoform 1 132 432 - -
Phco4g00367 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 397 438 IPR001680 GO:0005515
Phco4g00367 454 SUPERFAMILY WD40 repeat-like 145 438 IPR036322 GO:0005515
Phco4g00367 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 221 - -
Phco4g00367 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 225 IPR001680 GO:0005515
Phco4g00367 454 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Phco4g00367 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 309 353 IPR001680 GO:0005515
Phco4g00367 454 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 308 IPR001680 GO:0005515
Phco4g00367 454 ProSitePatterns Trp-Asp (WD) repeats signature. 416 430 IPR019775 -
Phco4g00367 454 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 397 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00367 Phco-Chr4 2411037 2415241 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00367 4 2411037 2415241 Phco4g00367 4 2411037 2415241 ECH