Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00360 ATGGATGATGAGTTTTTTTACGGAAACAAAGCGCCATCTGGTGTCATAAAAGCGATAAAGTTTGATGTCTTAACTGAAAATGATATAGAGAAAGTCTCTGTTTTGGAGATAAATGCAGTCAGCCAGGTCACTGGGTCTACTTTGGGACTTCCAAATACATCTGACGAGTGTGCCACTTGTGGCTCTAAAAACAAAAAGATTTGTGAAGGTCATTTTGGAGTAATCAAATTTCCTTTTCCCATACTCCATCCATATTTTATGTCAGAGATTGCACAAATCTTGAATAAGATTTGCCCTGTTTGTAAATCTATTCGTCATAAATCTAAGGGTGCTCAATTAATCTTTGGAATAAAGCGGTCTATCAATTGCAAATATTGTTCTGGAAATGGGGTGGGCCGTTATCCAGCGATGAAGTTTAAATTTTCGTCCAATGATCTCTACAGAAGAACTGCAATTATTGTTGAAGTGAATGATAAGGCCTCAAAGAAAAGTTTGGGACGAAGCCTGCCTGCTGATTATTGGGATTTTATTCCGTATGATGCTCAACAAGAAGAAAATTATGTAAATAGAAGAGTTTTATCGCCAGGACAGGTTACTTCTTTGTTGAATGATGTTGATCCGAACTTCATTGAAAAATATATTCCAAGAAATAATTTGATTAGTCTTAATTGCTTCCCAGTGACTCCAAATTGTCATCGTGTAACAGAAGTCCCTTATGCAATTTCGAATGGAAACCGATTGAGTTTTGATGACAGGACTCGATTTTGTAAGAAATTGGTTGATTTCAGGGGTACAGCTAATGAGTTAAGTTCTCGTGTTTTGGATTGCCTGAGGATTTCTAAGCTAAATCCTGATAAAACACCTAATAGTATTTTTGCTGATATTCAAAAAAAGAAAGTTGCAGAAAATGCTTGCAATTCTTCGGGTTTAAGATGGATAAAAGATGTGGTTCTTGGAAAACGCAATGATAGTACTTTCCGTACAGTGGTTGTTGGTGATCCATACCTTGAGCTCAGTGAAATTGGTATACCTTGTCATATTGCTGAAAGTTTGCAGGTTTCTGAGTATGTTAACAGGCAGAATTTGGAAAAGCTGCTTTATTGTTGTGAGCTACGCCTGTTAGAGAAGGGACAGATAAATGTTTGCAGAAAAGGTAGTTCAATTCATCTGTTTAAAAAGGAAGATCTAAAGATAGGAGACCAATTTTATAGGCCTCTTTGTGATGGGGATAAAGTTCTGATAAATAGGCCCCCTTCCATACATCAACATTCTATGATTGCTCTCACTGTTAGGGTCCTTCCAATATCTTCTGTAGTGTGTATTAACCCACTCTGTTGTTCTCCACTTCGTGGGGATTTTGATGGCGATTGCCTTCACGGGTATATTCCACAATCAGTTAGTGCAAGAGTTGAGCTTAATGAGCTTGTTGCTTTGGATAGGCAATTGTTCAATGGGCAAAGTGGTAGAAATCTGCTTTCACTTTCCGAGGATAGTTTAACTGCTGCATATTTGCTAATGGAAGATGGGGTCCTTTTAGATGTTTACCAGATGCAGCAGCTTCAAATGCTTTGTAACAAAGGTTTAGCTCCTCCTGCAATTGTAAAGTCTCCTTCAAGTAACAGCTCATTTTGGAGTGGCAAGCAATTGTTTAGCATGCTCTTGCCTTCTGATTTTGACTATTCTTTTCCTTCAGATGGTGTTGTTGTTAGTGATGGGGAGCTTGTATCTTCTTTTGAGGCTTCTGGATGGTTACGTGATTCTGATTGCAATGTTTTCCAGAGTCTTGTGGAACATTTTAAAGGGAAATCTCTAAACTTTTTGTTTGCTGCGCAGAATGTTTTGTGTGAATGGTTATCTATGACTGGTTTTAGTGTTTCACTCTCAGATTTGTACCTCTCTTCTGATTCCTATGCACGAAAAAACATGATTGAGGAAATCTTTTATGGCTTACAAGATGCAGAGAAGGCGTGTAATTTCAAGCAGTTATTGTTGGATTGTTATTGTGATTTTTTGTCCGGAAATCATGAAGAGAGTGAAAATTCTATGACTGTTGATGCAGATAGTCTGAATTATGAAAGACAAATATCTGCTGCTCTCAGTCAGGCATCAGTTGATGCTTTTAGGCATGTTTTTCGCAATATTCAAAGTTTAGCCGACAAATATGCATGTACAGACAATACTTTTCTCGCCATGAATAAGGCTGGAAGCAAGAGTAGTTTAGTGAGATTAGCTCAACATTCCATGTGCCTTGGCATGCAAAATTCTCTGGTACGTTTATCTTACAGACTACCCCGCCATCTTTCATGTGCTGCTTGGAATAGTCAAAAGGGGCTTGATTCAATCCAGATATATTCTGGTACTGAATCTGTTCAGTCTTACATTCCATGTGCCGTGGTCAAAAGCTCATTTCTGACTGGGTTAAATCCACTTGAATGTTTTGTTCATTCTGTGACAATCCGAGCTAGTGGTTTCAGTGAAAATGCAGACGTTCCTGGCACATTAACACGGAGACTAATGTTCTTCATGCGTGATTTGTTTGCTGCATATGATGGAACAGTGAGAAATTTATATGGTAATCAACTCATTCAGTTTTCTTATGATATTGACGAGAACTCTTCATGTGATAAAAGTTTCAAAGAGTATGCTATTGGTGGTGAACCAGTTGGGGCACTTTCTGCTTCTGCAGTTTCAGAAGCTGGATACAGTGCTCTGGATCAACCAGTTAGTCTACTTGAAGCGTCACCTTTGCTGAATTTGAAAAATGTTCTTGAGTGTGGTTCAAGGAAAAAAAATGGTGACCAGTCCGTGTCTTTATATTTTTCTGAAAAAGTTGGTAAACTGAGACATGGGTTTGAATATGCAGCTTTAGAAGTTAAGAACTATTTGGAAAGATTGCTGTTCTCAAAAATTGTTTCTACTGTGATGATAATATTCACCCCACCTGATGGCAGCAGCCTAGAGAAATACAGTCCTTGGGTCTGCCACTTTCATTTGGACAAGGAAATTCTAATGAAAAGAAAGTTGAAAGTGCATTCTATCATTGACTATCTTTACCAGAGATATTACTCCCAGAGAACAGAACCAAAAGTCTGTTTTACCAACTTGAAAATATCAAGCAAAAAGTGTTTTGCTGATTCCACGGCTAAGGAAGGTGAAGACACTTTTATAGATAAAGAAGACAGTGATGATTGCATCACGGTTGCAATTGTTGAAAATTCTGAGAATCCTATACAACTGGATTCCGTTCGGGACTTGATGATACCTTTTTTTCTAGGAACAACAATAAAAGGATTTATGGACATCAAGAAGGTTGATATTCTCTGGAACAATCAATCAAAAGTAACAAATTCTTATAATGGTTCTTCTGGTGAACTGTACTTGAGGGTTACTGTGGCCAGCTCGGGTAACACTGGAAAATTCTGGGGTGTACTTGTAAATCATTGTCACAAGTTAATGCAGATAATTGACTGGCCACGGAGTCATCCAGACAACATAAATTATCTCTCATCAGCCTTTGGAATTGATGTAGCGTGGCAATATTATTACAAGAGTTTGGCATCGGCAATATGTGATACTGGAAAGTCCATCCTTCCTAAGCATCTGCGTCTTCTTGCCAATAGTATGTCAGCTAGTGGAGAGTTTGTGGGATTAAATGCTAAAGGCATGGCCCAGCAACGACAGCATGCGTCCGTTTCATCACCATTTGTGCAAGCATGCTTTTCTAATCCAGGTAGGAGCTTTATAAAAGCTGCCAAGTCTGAACTCACGGATAATCTCCAGGGCAGCCTGGATGCATTGGCTTGGGGAAACTGTCCCTCTATGGGGACAAGTGGACTGTTTGATATCATATATTCAGAGAAGGGACATGAGGTAGACAAGTCCGTAGATGTGTATAAGCTGCTAGAAGCCAGTTTTGACAAGCCGAACAGTAAGATTGGTTTACATGCTCACAACAATTCATCTGGCAAATGTGGTTCCGAGTTTAGGCATAAAAATGGTTATGCCTTTAAAGAGGGAAAACAGTGGAAGAACATTCTAAGAAATTTTGTGACAGTAAATGATATTCAGAAGCTGACTACTGCTTCAAGGTGCATATTGAACAAGTATGCAATTGATGAGCTGCTAAGTGAGTTTGACAGATCAACAATTCTAAGAGTTTTGAATTTTCATCCTCGTAGAAGTGAGAAGTTAGGTATTGGACCACAGGACATTAAGGTTGGATTGCATCCTAAATTTAAGGATAGCCGCTGCTTCCATATAGTACGAACTGATGGAACAGTTGAAGATTTTTCATACCGCAAATGCATTCTTGGTGCTCTTGAGGTCGTTGATCCAAAAATGTCAAAGATCCAGAAGAAAAAATGGTCAGCACGTGATGACGCACAAATTCAGTGCGTGTCCAAGGATATGGAGTGA 4416 0.3879 MDDEFFYGNKAPSGVIKAIKFDVLTENDIEKVSVLEINAVSQVTGSTLGLPNTSDECATCGSKNKKICEGHFGVIKFPFPILHPYFMSEIAQILNKICPVCKSIRHKSKGAQLIFGIKRSINCKYCSGNGVGRYPAMKFKFSSNDLYRRTAIIVEVNDKASKKSLGRSLPADYWDFIPYDAQQEENYVNRRVLSPGQVTSLLNDVDPNFIEKYIPRNNLISLNCFPVTPNCHRVTEVPYAISNGNRLSFDDRTRFCKKLVDFRGTANELSSRVLDCLRISKLNPDKTPNSIFADIQKKKVAENACNSSGLRWIKDVVLGKRNDSTFRTVVVGDPYLELSEIGIPCHIAESLQVSEYVNRQNLEKLLYCCELRLLEKGQINVCRKGSSIHLFKKEDLKIGDQFYRPLCDGDKVLINRPPSIHQHSMIALTVRVLPISSVVCINPLCCSPLRGDFDGDCLHGYIPQSVSARVELNELVALDRQLFNGQSGRNLLSLSEDSLTAAYLLMEDGVLLDVYQMQQLQMLCNKGLAPPAIVKSPSSNSSFWSGKQLFSMLLPSDFDYSFPSDGVVVSDGELVSSFEASGWLRDSDCNVFQSLVEHFKGKSLNFLFAAQNVLCEWLSMTGFSVSLSDLYLSSDSYARKNMIEEIFYGLQDAEKACNFKQLLLDCYCDFLSGNHEESENSMTVDADSLNYERQISAALSQASVDAFRHVFRNIQSLADKYACTDNTFLAMNKAGSKSSLVRLAQHSMCLGMQNSLVRLSYRLPRHLSCAAWNSQKGLDSIQIYSGTESVQSYIPCAVVKSSFLTGLNPLECFVHSVTIRASGFSENADVPGTLTRRLMFFMRDLFAAYDGTVRNLYGNQLIQFSYDIDENSSCDKSFKEYAIGGEPVGALSASAVSEAGYSALDQPVSLLEASPLLNLKNVLECGSRKKNGDQSVSLYFSEKVGKLRHGFEYAALEVKNYLERLLFSKIVSTVMIIFTPPDGSSLEKYSPWVCHFHLDKEILMKRKLKVHSIIDYLYQRYYSQRTEPKVCFTNLKISSKKCFADSTAKEGEDTFIDKEDSDDCITVAIVENSENPIQLDSVRDLMIPFFLGTTIKGFMDIKKVDILWNNQSKVTNSYNGSSGELYLRVTVASSGNTGKFWGVLVNHCHKLMQIIDWPRSHPDNINYLSSAFGIDVAWQYYYKSLASAICDTGKSILPKHLRLLANSMSASGEFVGLNAKGMAQQRQHASVSSPFVQACFSNPGRSFIKAAKSELTDNLQGSLDALAWGNCPSMGTSGLFDIIYSEKGHEVDKSVDVYKLLEASFDKPNSKIGLHAHNNSSGKCGSEFRHKNGYAFKEGKQWKNILRNFVTVNDIQKLTTASRCILNKYAIDELLSEFDRSTILRVLNFHPRRSEKLGIGPQDIKVGLHPKFKDSRCFHIVRTDGTVEDFSYRKCILGALEVVDPKMSKIQKKKWSARDDAQIQCVSKDME 1471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00360 1471 Pfam RNA polymerase Rpb1, domain 3 483 630 IPR007066 GO:0003677|GO:0003899|GO:0006351
Phco4g00360 1471 Pfam RNA polymerase Rpb1, domain 2 319 476 IPR000722 GO:0003677|GO:0003899|GO:0006351
Phco4g00360 1471 Gene3D RNA polymerase II, clamp domain 8 124 IPR044893 -
Phco4g00360 1471 Pfam RNA polymerase Rpb1, domain 1 16 258 IPR007080 GO:0003677|GO:0003899|GO:0006351
Phco4g00360 1471 Gene3D RNA polymerase Rpb1, domain 3 486 627 IPR042102 -
Phco4g00360 1471 Gene3D - 314 485 - -
Phco4g00360 1471 SMART rpolaneu7 218 506 IPR006592 GO:0003677|GO:0003899|GO:0006351
Phco4g00360 1471 PANTHER DNA-DIRECTED RNA POLYMERASE 20 1283 IPR045867 GO:0003899|GO:0006351
Phco4g00360 1471 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 11 1285 - -
Phco4g00360 1471 FunFam DNA-directed RNA polymerase subunit 486 624 - -
Phco4g00360 1471 CDD RNAP_IV_RPD1_N 24 854 IPR040403 -
Phco4g00360 1471 Pfam RNA polymerase Rpb1, domain 4 708 759 IPR007083 GO:0003677|GO:0003899|GO:0006351
Phco4g00360 1471 Gene3D - 628 807 IPR038120 -
Phco4g00360 1471 Gene3D - 1347 1438 - -
Phco4g00360 1471 Pfam Protein of unknown function (DUF3223) 1365 1436 - -
Phco4g00360 1471 Gene3D RNA polymerase ii 352 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00360 Phco-Chr4 2330405 2340520 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00360 4 2330405 2340520 Phco4g00360 4 2330405 2340520 ECH