Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00320 ATGAACAACTTCAAGTTAGGCGTAGATGTGATTAGTGCTCACAATCTATTACCTAAAGATGGACTAGGTTCGTCCAATGCCTTTGTAGAACTTTATTTTGATGGCCAGAAGTACCGTTCGACCATCAAAGAAAAGGATCTTAGCCCTGTTTGGAATGAGAGCTTCTACTTCAATATATCTGACCCTTCTAATCTTCACTATCTCTCACTTGAGGTCTATGTCCACAGCCATTCAAAGGCTACTAACTCCACTTCATTTCTTGGCAAGGTTAGCCTTACTGGGACTTCTTTTGTGCCTTACTCTGATGCAGTTGTCTTACACTATCCATTGGAAAAGCGTGGTATTTTTTCTCGTGTCAGAGGAGAGATTGGTCTTAAAGTTTACATCACTGATGACCCAACCATAAAATCATCTGTTCCAACTCCTGTTGTTGATTCCATGCCAACTAATAATCCTAGCTCAACACATGCAGAAGTTCGAGCACCTGCAAGCGCAATGGCAAACAGTTTTCCAAATGAAAATGTTGTGTCAAGGCACACATTTCATCATCTTCCCAACATAAAGCATCACCAGAACCAGCACCAGCAGCATTCAACTGGCTTTGCTGATACTCATTATGTAACAAAGTATGAAGCTGATGAAATGAAGTCTGAACCACAACCCATGAAGCTAGTACGCACAGCTACATCAGGACAACCAGTTGATTTTGCACTTAAAGAAACAAGTCCATATCTTGGCGGGGGAAGAGTTGTTGGTGGTCGTGTTATTCATAAAGACAAAACAGATAGTACATACGATCTTGTAGAAAGGATGTATTTTCTGTATGTCAGGGTTGTCAAGGCTCGTGAGCTTCCTACTATGGATATTACTGGGAGTCTTGATCCATTTGTTGAGGTGAGAATTGGAAATTACAAAGGTATTACCAGACACTTTGATAAGAATCAGAGTCCTGAATGGAATCAGGTGTTTGCCTTCTCAAAGGACCGGATGCAAGCATCCATACTAGATGTTGTGATAAAGGACAAGGATCTCATCAAAGATGATTTCGTTGGCATTGTGAGGTTTGACATCAATGAGGTTCCTTTGAGAGTCCCACCAGATAGCCCTTTGGCTCCGGAGTGGTACCGTCTTGAGGACAAGAAAGGGGATAAGATTAAAGGTGAGTTGATGCTTGCTGTCTGGATTGGTACTCAAGCAGATGAGGCTTTTTCTGATGCATGGCATTCAGATGCAGCCACACCTGTTGACAGCACACATGCTATCTCTGCAGTGATGCGTTCAAAGGTGTATCATGCACCAAGGTTATGGTACGTGCGCGTCAATATTGTGGAGGCACAAGACTTGGTTCCTACAGAGAAAAACCGTTTCCCAGATGTGTATGCCAAGGTGCAGATAGGAAACCAAGTGCTGAAAACAAAGACAGTTCCGGCACGAACACTGAGCGCACTCTGGAATGAGGATCTTTTATTTGTTGCTGCTGAACCTTTTGAAGATCATTTAATCATTTCTGTTGAAGATCGGGTTAGTCCTGGGAAAGATGAGATCATTGGGAGGATCATCATACCACTGAACTCTGTGGAGAGGCGTGCGGATGATAGAATCATTCATTCTAGATGGTTCAACTTGGAAAAGCCAGTTGCTATAGATGTCGATCAGTTGAAGAAGGAAAAGTTCTCAAGCAGAATTCAGCTCCGGTTATGTCTAGATGGAGGATATCATGTTCTTGACGAGTCTACTCATTACAGCAGTGATCTCCGTCCCACAGCAAAGCAATTGTGGAAGCCACCAATTGGGGTTTTAGAACTTGGAGTACTGAATGCTGTAGGACTCCACCCAATGAAAACAAGGGATGGCAGAGGCACATCTGACACATACTGTGTCGCAAAATATGGTCACAAATGGGTAAGAACAAGGACCATTGTTGACAATCTGTGTCCAAAATACAACGAGCAATACACTTGGGAGGTTTTTGATCATGCCACAGTTCTTACGGTTGGTGTCTTCGACAACAGCCAGATCGGGGAAAAGGGTAACGGTTCATCGAAGGACTTGAAGGTTGGGAAGGTCAGAATTCGCATCTCTACTTTAGAAACAGGCAGGATTTACACTCACTCATATCCATTGTTGGTTCTTCACCCAACTGGGGTTAAGAAGATGGGTGAACTTCACTTGGCAATACGGTTTTCATGCACTTCTTTAGCAAACATGCTTTACCTGTACTCACGTCCACTGCTGCCTAAAATGCACTATGTTAGGCCTTTCTCTGTGACACAGCTAGACATGCTACGCCACCAAGCAATGAACATAGTGGCAGCACGACTAGGCCGAGCAGAGCCACCACTTCGCAAGGAAGTGGTGGAATACATGTCGGATGTGGACTCTCACCTTTGGAGCATGCGGCGAAGCAAGGCCAATTTCTTCAGACTGATGACTGTCTTCTCTGGTGTGTTTGCGGTTGGGAAGTGGTTTGGTGAAATCTGCATGTGGAGAAATCCTATCACAACAGTGCTGGTTCATGTGCTGTTTCTCATGCTAGTATGCTTCCCAGAATTGATCTTGCCCACTGTTTTTATCTACATGTTTTTGATAGGGGTGTGGAACTTCAGATATAGACCAAGGTACCCTCCTCACATGAACACAAGAATCTCACAAGCTGAGGCAGTGCACCCGGATGAGTTGGATGAAGAGTTTGACACTTTCCCAACGAGCAGAGACCCAGAACTTGTGAGAATGAGGTATGATCGCTTGAGGAGTGTGGCTGGAAGGATTCAAACAGTGATTGGGGATTTGGCCAGCCAGGGAGAAAGGATTGAGGCACTGTTAAGCTGGAGAGACCCACGTGCTACATCCTTATTTATTACATTATGTCTTCTATCTGCGTTGGTTCTCTATGTTACCCCTTTTCAAGCTGTGGCTGGTTTGGCAGGTTTCTACATCATGAGGCATCCAAGGTTTCGCCACAGGCTGCCATGTGTCCCAATCAACTTTTTCCGACGCCTCCCTGCAAGAACAGACAGTATGTTGTAG 3027 0.444 MNNFKLGVDVISAHNLLPKDGLGSSNAFVELYFDGQKYRSTIKEKDLSPVWNESFYFNISDPSNLHYLSLEVYVHSHSKATNSTSFLGKVSLTGTSFVPYSDAVVLHYPLEKRGIFSRVRGEIGLKVYITDDPTIKSSVPTPVVDSMPTNNPSSTHAEVRAPASAMANSFPNENVVSRHTFHHLPNIKHHQNQHQQHSTGFADTHYVTKYEADEMKSEPQPMKLVRTATSGQPVDFALKETSPYLGGGRVVGGRVIHKDKTDSTYDLVERMYFLYVRVVKARELPTMDITGSLDPFVEVRIGNYKGITRHFDKNQSPEWNQVFAFSKDRMQASILDVVIKDKDLIKDDFVGIVRFDINEVPLRVPPDSPLAPEWYRLEDKKGDKIKGELMLAVWIGTQADEAFSDAWHSDAATPVDSTHAISAVMRSKVYHAPRLWYVRVNIVEAQDLVPTEKNRFPDVYAKVQIGNQVLKTKTVPARTLSALWNEDLLFVAAEPFEDHLIISVEDRVSPGKDEIIGRIIIPLNSVERRADDRIIHSRWFNLEKPVAIDVDQLKKEKFSSRIQLRLCLDGGYHVLDESTHYSSDLRPTAKQLWKPPIGVLELGVLNAVGLHPMKTRDGRGTSDTYCVAKYGHKWVRTRTIVDNLCPKYNEQYTWEVFDHATVLTVGVFDNSQIGEKGNGSSKDLKVGKVRIRISTLETGRIYTHSYPLLVLHPTGVKKMGELHLAIRFSCTSLANMLYLYSRPLLPKMHYVRPFSVTQLDMLRHQAMNIVAARLGRAEPPLRKEVVEYMSDVDSHLWSMRRSKANFFRLMTVFSGVFAVGKWFGEICMWRNPITTVLVHVLFLMLVCFPELILPTVFIYMFLIGVWNFRYRPRYPPHMNTRISQAEAVHPDELDEEFDTFPTSRDPELVRMRYDRLRSVAGRIQTVIGDLASQGERIEALLSWRDPRATSLFITLCLLSALVLYVTPFQAVAGLAGFYIMRHPRFRHRLPCVPINFFRRLPARTDSML 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00320 1008 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 598 731 IPR035892 -
Phco4g00320 1008 Gene3D C2 domain 418 568 IPR035892 -
Phco4g00320 1008 Gene3D C2 domain 255 395 IPR035892 -
Phco4g00320 1008 CDD C2A_MCTP_PRT_plant 5 131 - -
Phco4g00320 1008 ProSiteProfiles C2 domain profile. 1 108 IPR000008 -
Phco4g00320 1008 FunFam C2 domain-containing protein 268 412 - -
Phco4g00320 1008 FunFam C2 domain-containing protein 423 568 - -
Phco4g00320 1008 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 144 IPR035892 -
Phco4g00320 1008 ProSiteProfiles C2 domain profile. 415 540 IPR000008 -
Phco4g00320 1008 Gene3D C2 domain 595 732 IPR035892 -
Phco4g00320 1008 Pfam C2 domain 274 368 IPR000008 -
Phco4g00320 1008 Pfam C2 domain 599 708 IPR000008 -
Phco4g00320 1008 Pfam C2 domain 436 541 IPR000008 -
Phco4g00320 1008 Pfam C2 domain 5 93 IPR000008 -
Phco4g00320 1008 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 5 1008 IPR047259 -
Phco4g00320 1008 FunFam C2 calcium/lipid-binding plant phosphoribosyltransferase family protein 2 129 - -
Phco4g00320 1008 FunFam C2 domain-containing protein 581 732 - -
Phco4g00320 1008 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 436 589 IPR035892 -
Phco4g00320 1008 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 272 411 IPR035892 -
Phco4g00320 1008 Pfam Plant phosphoribosyltransferase C-terminal 853 1008 IPR013583 -
Phco4g00320 1008 CDD C2D_MCTP_PRT_plant 599 725 IPR047255 -
Phco4g00320 1008 Gene3D C2 domain 1 130 IPR035892 -
Phco4g00320 1008 ProSiteProfiles C2 domain profile. 255 375 IPR000008 -
Phco4g00320 1008 SMART C2_3c 5 106 IPR000008 -
Phco4g00320 1008 SMART C2_3c 437 535 IPR000008 -
Phco4g00320 1008 SMART C2_3c 599 705 IPR000008 -
Phco4g00320 1008 SMART C2_3c 273 369 IPR000008 -
Phco4g00320 1008 CDD C2C_MCTP_PRT_plant 437 587 IPR047258 -
Phco4g00320 1008 ProSiteProfiles C2 domain profile. 581 706 IPR000008 -
Phco4g00320 1008 CDD C2B_MCTP_PRT_plant 273 397 IPR047257 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00320 Phco-Chr4 2038385 2041411 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00320 4 2038385 2041411 Phco4g00320 4 2038385 2041411 ECH