Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00281 ATGGGGTACGATTTGGTGTTCATTGCTGTGTTCTTGTGGAGTTCAATGGTTTGTCACAATGGATTAGCCATGACGGATGATGGGAAGTTGATGAGCTCCTCAGGCCCACCTAATTATGACTATGCAGATGCTCTTGGCAAAGCTATTTTGTTTTTTGAAGGACAACGCTCAGGGAAGTTGCCCTCAAGCCAAAGAGTGAAGTGGAGGGAAGACTCCGCTCTCTCTGATGGCAAACTTCAAAACGTGAATTTGATCGGAGGATACTACGATGCTGGTGATAACGTCAAGTTTGGATGGCCAATGGCATTTTCTACTAGCTTATTGAGTTGGGCTGCTGTAGAGTACGAGAGTGAGATATCTTCCGTGAGCCAGCTTGGTTATCTCCAAAGTGCTATCCGTTGGGGTGCAGACTTCATATTGAGAGCACATACTTCCCCAACCACCCTCTATACACAGGTTGGAGATGGAAACGCTGATCACAATTGTTGGGAGCGCCCAGAAGACATGGATACACCAAGGACAGTCTATAAGATAGATGCTAATTCTCCAGGAACTGAAGCCGCAGCTGAGTATGCTGCTGCTCTTTCTGCCGCTTCAATTGTATTCAAGAAAATAGATGCCAAGTATTCCTCCACGTTATTAAGCCATTCAAAATCACTGTTTGATTTTGCAGACAAGAACAGAGGTTCTTACTCCGGTTCTTGCCCATTCTACTGCTCGTACTCTGGTTACCAGGATGAACTGCTATGGGCTGCTGCTTGGCTGCACAAGGCGAGTGGAGAAACCAAGTATCTGACCTACATCATAAGTAACCAAGGATGGAGCCAGGCAGTGTCTGAATTCAGCTGGGATAACAAATTTGTTGGGGCTCAGACATTACTAACCGAGGAATTCTATGGTGGGAAGAAAGACTTGGCCAAGATTAAGACTGACGCTGAGTCATTTATATGCGCTGTGATGCCAGGAAGTAGCTCTCGACAGATTAAAACAACTCCTGGTGGCCTTCTGTTTACTAGAGATAGTAGCAATCTGCAATATACCACAAGCTCGACCATGGTGCTATTCATTTTCTCTAGAATCCTAAACAGAAATCGTATCAACGGAATCAATTGTGGCTCCGCGCATTTCACACCCTCTCAAATTAGAGCCTTTGCCAAAACACAGGTGGACTACATACTAGGAAAGAATCCGATGAAGATGTCGTACATGGTGGGATTTGGCAGCAAATACCCAAAGCAATTACATCACAGAGGCTCATCCATTCCTTCAATCAAAGTTCACCCAGCCAAGGTGGGTTGCAATGCTGGTCTCTCAGATTATTACAATTCTGCTAATCCAAATCCCAATACCCATGTGGGTGCCATTGTTGGAGGCCCCGATTCAAATGACCATTTCAATGATGCAAGATCTGACTATTCCCACGCCGAGCCTACCACCTACATGAATGCTGCTTTCGTGGCTTCAGTCCCTGCTTTGCTTGCCAAAACCTAA 1491 0.4554 MGYDLVFIAVFLWSSMVCHNGLAMTDDGKLMSSSGPPNYDYADALGKAILFFEGQRSGKLPSSQRVKWREDSALSDGKLQNVNLIGGYYDAGDNVKFGWPMAFSTSLLSWAAVEYESEISSVSQLGYLQSAIRWGADFILRAHTSPTTLYTQVGDGNADHNCWERPEDMDTPRTVYKIDANSPGTEAAAEYAAALSAASIVFKKIDAKYSSTLLSHSKSLFDFADKNRGSYSGSCPFYCSYSGYQDELLWAAAWLHKASGETKYLTYIISNQGWSQAVSEFSWDNKFVGAQTLLTEEFYGGKKDLAKIKTDAESFICAVMPGSSSRQIKTTPGGLLFTRDSSNLQYTTSSTMVLFIFSRILNRNRINGINCGSAHFTPSQIRAFAKTQVDYILGKNPMKMSYMVGFGSKYPKQLHHRGSSIPSIKVHPAKVGCNAGLSDYYNSANPNPNTHVGAIVGGPDSNDHFNDARSDYSHAEPTTYMNAAFVASVPALLAKT 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00281 496 Gene3D - 37 496 IPR012341 GO:0005975
Phco4g00281 496 Pfam Glycosyl hydrolase family 9 41 487 IPR001701 GO:0004553|GO:0005975
Phco4g00281 496 SUPERFAMILY Six-hairpin glycosidases 38 493 IPR008928 GO:0005975
Phco4g00281 496 FunFam Endoglucanase 37 496 - -
Phco4g00281 496 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 391 417 IPR018221 -
Phco4g00281 496 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 3. 465 483 IPR033126 -
Phco4g00281 496 PANTHER ENDO-1,4-BETA-GLUCANASE 24 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00281 Phco-Chr4 1793909 1796735 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00281 4 1793909 1796735 Phco4g00281 4 1793909 1796735 ECH