Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00280 ATGTGTTGGCCTACAGTAACATGCAGCCCAAATCAAGGCCCAAATGGTAGCCTTCCAGCCCACAAGTGGAACAGAAAACCGCAGCTCAACAAAATACTGAAGAGCAAAAAGCAGAACAACAAAAAGTGGGAGAAGGGAGGAAGAAGTAAAGCAAGGAATGAAGAGAAGGGTCTAGAACACTGCCTGCTCAGAAATAATACTGCGGAACGCGCGTCAACCACAACGCAACGCTCACACGAAATCGGAATGGCGAAGGAGCTTGAGAAGAAGGCGAAGGAAGCATTCTTCGACGACGACTTCGCTCTCGCCGTTGATTTCTACTCCGAAGCCATACAACTAGATCCAAACGACGCTCATCTCTTCGCTGACAGAGCACAAGCCCATATTAAGCTCAACGCTTTCACTGAAGCAGTTTCCGATGCAAACAAAGCCATCCAGTTGAACCCTTCCTTGTCCAAGGCCTATCTTCGTAAAGGGACCGCTTGTATGAAACTAGAAGAATATCACACTGCCAAGGTAGCGCTTCAAAACGGTGCCGCTTTAGCGCAAGACGATTTAAGATTCTCCAAGTTGATTCAAGAATGTGACCGCTATATTTCAGAGGAATCAAATGGTCTTATTAACACCGAATCGTCAAATGGTTCCCACTTGAGCAATACAAATGACGGGGTGACTAAAGAAGCTGAAGGAGACAGTTTGGAATCCCAATTCAATGAAGTCACAATAAACACACCAAAATACAGACATGAATACTACCAAAAGCCACAAGAAGTGGTTGTGACAATATTTGCAAAAGGAATATCAGCAAAAGATTTGGTTGTTGACTTCGGTGAACAGATTCTTAGTGTAACTATTGATGTTCCTGGCCAAGATGCCTATCATTTCCAACCTCGATTGTTTGGGAAGATAATACCCAACAACTGCAGAGTTGTGGTATTGCCAACCAAAATTGAAATTCGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTGGAATATAGCAAGGATACACTACCCCCTAAAATAAACATGCCTATCGTTCAATCTGAAAGGCCTTCATACCCATCATCGAAACCAAGGGCAAGAGATTGGGATAAATTGGAAGCTCAAGTGAAAAAAGAGGAAAAAGAAGAAAAGCTTGATGGTGATGCTGCTTTGAATAAATTGTTCCGTGATATTTACCAGAATGCAGATGAGGACATGAGGAGGGCAATGAGCAAGTCTTTCTTGGAGTCAAATGGAACAGTGCTATCAACTGATTGGAAAGAAGTGGGATCAAAGAAGGTGGAAGGCAGTCCTCCAGATGGCATGGAGCTGAAAAAATGGGAGTATTAA 1338 0.432 MCWPTVTCSPNQGPNGSLPAHKWNRKPQLNKILKSKKQNNKKWEKGGRSKARNEEKGLEHCLLRNNTAERASTTTQRSHEIGMAKELEKKAKEAFFDDDFALAVDFYSEAIQLDPNDAHLFADRAQAHIKLNAFTEAVSDANKAIQLNPSLSKAYLRKGTACMKLEEYHTAKVALQNGAALAQDDLRFSKLIQECDRYISEESNGLINTESSNGSHLSNTNDGVTKEAEGDSLESQFNEVTINTPKYRHEYYQKPQEVVVTIFAKGISAKDLVVDFGEQILSVTIDVPGQDAYHFQPRLFGKIIPNNCRVVVLPTKIEIRLAKAEAINWTSLEYSKDTLPPKINMPIVQSERPSYPSSKPRARDWDKLEAQVKKEEKEEKLDGDAALNKLFRDIYQNADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPDGMELKKWEY 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00280 445 Gene3D Tetratricopeptide repeat domain 74 218 IPR011990 GO:0005515
Phco4g00280 445 PANTHER PROTEIN SGT1 HOMOLOG 83 443 IPR044563 GO:0051087
Phco4g00280 445 SMART tpr_5 152 185 IPR019734 GO:0005515
Phco4g00280 445 SMART tpr_5 84 117 IPR019734 GO:0005515
Phco4g00280 445 SMART tpr_5 118 151 IPR019734 GO:0005515
Phco4g00280 445 Pfam Tetratricopeptide repeat 120 150 IPR019734 GO:0005515
Phco4g00280 445 ProSiteProfiles TPR repeat profile. 118 151 IPR019734 GO:0005515
Phco4g00280 445 MobiDBLite consensus disorder prediction 425 445 - -
Phco4g00280 445 Gene3D - 245 336 IPR008978 -
Phco4g00280 445 ProSiteProfiles SGS domain profile. 354 445 IPR007699 -
Phco4g00280 445 Pfam SGS domain 363 443 IPR007699 -
Phco4g00280 445 SUPERFAMILY TPR-like 83 195 IPR011990 GO:0005515
Phco4g00280 445 ProSiteProfiles TPR repeat profile. 84 117 IPR019734 GO:0005515
Phco4g00280 445 FunFam Protein SGT1 homolog 83 212 - -
Phco4g00280 445 SUPERFAMILY HSP20-like chaperones 243 343 IPR008978 -
Phco4g00280 445 MobiDBLite consensus disorder prediction 207 235 - -
Phco4g00280 445 MobiDBLite consensus disorder prediction 37 57 - -
Phco4g00280 445 ProSiteProfiles CS domain profile. 244 333 IPR007052 -
Phco4g00280 445 MobiDBLite consensus disorder prediction 1 18 - -
Phco4g00280 445 MobiDBLite consensus disorder prediction 1 57 - -
Phco4g00280 445 MobiDBLite consensus disorder prediction 207 226 - -
Phco4g00280 445 FunFam Protein SGT1 homolog A 242 346 - -
Phco4g00280 445 CDD p23_CS_SGT1_like 250 333 - -
Phco4g00280 445 Pfam CS domain 248 323 IPR007052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00280 Phco-Chr4 1786211 1792212 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00280 4 1786211 1792212 Phco4g00280 4 1786211 1792212 ECH