LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco4g00243	ATGGACGGAATGCAAGAAAGAAACTCAGAGCTTGGAACTGATATTGGTTCCTCCTTATCAAACCTGATATTAACAGGTGGTTCAAACGCCCTGGACTCAATTTTCTCGAATTGCCCCCCAACAAACGCCACCAGTAGCAACTCCGTGTTGGATCATTTAGAACCATTTGGGTCTTCGGGGTTTGAGCCTTTGGGCTCTTCCGTCTACCTTCGCCAGAGGGACATCCTCCAAAAGTTCTACCAAGAAAACCGAGGGAATGGGTCTTTTCTTCCCACTTCCCTGGCAAATCCATCTATAAACTCTGTTTACACTACTTCGTTGACTTCTTCTTTGACCAACCCTTGCAAGAAAAAGCTCTACAGGGGAGTGAGACAGAGACACTGGGGCAAATGGGTCGCGGAAATTAGACTACCCCAGAACAGGATGAGAGTGTGGTTGGGCACCTACGACACCGCAGAAGCCGCCGCCTATGCCTACGACCGCGCCGCCTATAAGCTACGTGGAGAGTACGCGCGCTTGAATTTCCCCAATTTGAAGGACCCCACCAAGTTGGGGTTCGGAGATTCCGCCAGATTGAACGCCTTGAAGAGCTCCGTCGACGCCAAAATCCAAGCCATATGCCAAAAGGTGAAAAGGGAGAGAGCCAAAAAGATCGCCGCCAAGAAGCTCAGTTCGGCCACCGCTCACGCCAACCGCAAGCAGAGCGAGAAGATCAATTCATCTGCCTCCTCCTCCTCCTCCTCGCTGCCGCTGTCGCCGTCGTCGATTTTTTGCGATAATTGGGCGAACGAGTTGTTTTCGCCTAGCGTTTCGGAGGACGGGATTTGGAAGGGGGAGAATTCGCCGGCGTCGGTTTCCATGGAATGTCCAACGATGGTAACGGACGACACAGAGTTCGAAGGTTGTTCGTTGGCGAGGTTGCCTTCTTTCGATCCCGAGTTGATTTGGGAAGTTCTTGCCATTTGA	966	0.5166	MDGMQERNSELGTDIGSSLSNLILTGGSNALDSIFSNCPPTNATSSNSVLDHLEPFGSSGFEPLGSSVYLRQRDILQKFYQENRGNGSFLPTSLANPSINSVYTTSLTSSLTNPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSARLNALKSSVDAKIQAICQKVKRERAKKIAAKKLSSATAHANRKQSEKINSSASSSSSSLPLSPSSIFCDNWANELFSPSVSEDGIWKGENSPASVSMECPTMVTDDTEFEGCSLARLPSFDPELIWEVLAI	321

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco4g00243	321	PRINTS	Ethylene responsive element binding protein signature	120	131	IPR001471	GO:0003700\|GO:0006355
	Phco4g00243	321	PRINTS	Ethylene responsive element binding protein signature	142	158	IPR001471	GO:0003700\|GO:0006355
	Phco4g00243	321	MobiDBLite	consensus disorder prediction	221	252	-	-
	Phco4g00243	321	PANTHER	ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061	41	319	-	-
	Phco4g00243	321	ProSiteProfiles	AP2/ERF domain profile.	119	176	IPR001471	GO:0003700\|GO:0006355
	Phco4g00243	321	CDD	AP2	118	178	IPR001471	GO:0003700\|GO:0006355
	Phco4g00243	321	Gene3D	AP2/ERF domain	119	177	IPR036955	GO:0003700\|GO:0006355
	Phco4g00243	321	SMART	rav1_2	119	182	IPR001471	GO:0003700\|GO:0006355
	Phco4g00243	321	MobiDBLite	consensus disorder prediction	227	252	-	-
	Phco4g00243	321	Pfam	AP2 domain	120	169	IPR001471	GO:0003700\|GO:0006355
	Phco4g00243	321	SUPERFAMILY	DNA-binding domain	119	176	IPR016177	GO:0003677
	Phco4g00243	321	FunFam	Ethylene-responsive transcription factor 2	118	177	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco4g00243	Phco-Chr4	1526412	1527377	Dispersed/Transposed

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Phco4g00243		AP2	6.6e-14	CL0081

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco4g00243	4	1526412	1527377	Phco4g00243	4	1526412	1527377	ECH