Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00222 ATGGGTTTCGCTTTGCCATACACAGCTTCAACCGCTGCTAATCTTCCTAATCTCCAATCTCACTCTCTCTTCGCTGCATTCAGATCCAAAACCTCTCACTCTCTCTGCACTTCTTATCGAGCCAAACGCATTCCAAAACGTTTTCCAATTATTCGCGCTGAATCTGAAAATGGAGCTCCGGTTACCTCTGAGAAGAACAACACAAATTACGGAAGACAATATTTCCCCCTCGCTGCTGTTGTAGGCCAAGATGCTATTAAAACTGCTCTTCTACTTGGGGCAACTGACCCTGGGATTGGAGGAATTGCCATATCAGGAAAGCGAGGAACTGCGAAAACTGTAATGGCACGTGGATTGCATGCAGTACTGCCTCCTATTGAAGTAGTAGTGGGTTCCATAGCCAATGCAGATCCATCTTGCCCAGAAGAGTGGGAAGATGGTCTTACAGAATGCCTGGAATACGATTCTGCTGGAAGTATTAAAACTCGTATTGTCAAGTCTCCCTTTGTTCAGATTCCTCTTGGAGTAACGGAGGACAGACTGATTGGATCGGTTGATGTTGAGGAGTCCGTGAAAACAGGCACAACTGTTTTCCAGCCGGGCTTACTTGCAGAAGCTCATAGAGGTGTTTTGTATGTTGATGAAATTAATCTTTTGGATGAGAGTATCAGTAATTTGCTCCTTAATGTATTGACCGAAGGAGTAAATACTGTTGAAAGAGAGGGGATCAGCTTCAAGCACCCTTGCAGGCCCCTTCTCATTGCCACCTATAACCCAGATGAGGGTGCTGTTCGTGAACATCTGCTAGATCGCATTGCGGTTAATTTAAGTGCAGATATTCCAATGAGTTTTGAAAACCGTGTTGCAGCTGTTGGAATTGCTACAGAGTTTCAGGAGAACACTCGCCAAGTATTTGAGATGGTTGAAGAGGAAACCGACAATGCAAAAACTCAGATCATATTGGCCAGAGAGTATCTAAAAGATGTCACTATTAGCAGTGAACAATTAAAATACCTGGTCATTGAAGCTTTACGAGGTGGTTGCCAGGGACATAGAGCTGAGCTATTTGCTGCCCGTGTTGCAAAGTGCTTAGCTGCTCTGGAGGGACGTGAAAAGGTTTATGTGGATGACCTAAAAAAAGCTGTGGAGTTGGTCATTCTACCCCGGTCAGTTGTTACTGAGAGCCCACCAGATCAACAAAATCAGCCTCCTCCTCCTCCGCCTCCTCCACAAAATCAAGAATCAGGCGAAGAACAGAATGAAGAGGAAGAGCAAGAGGATGACAAAGATGAAGAGAATGAACAGCAGCAAGAGCAATTACCCGATGAGTTTATTTTTGATGCTGAAGGGGGCTTGGTAGATGAAAAACTACTTTTCTTTGCCCAACAAGCACAGAGGCGCCGAGGGAAGGCTGGCAGAGCAAAAAATGTTATATTTTCAGAGGATAGAGGTCGATACATCAAGCCAATGCTTCCAAAGGGCCCTGTAAAGAGGTTAGCTGTTGATGCAACCCTTAGAGCTGCTGCACCTTATCAAAAATTGCGAAGGGCAAAAGACTCTGGAAGCAGTAGAAAAGTATTTGTGGAGAAAACTGACATGAGGGCTAAGAGAATGGCACGGAAAGCAGGAGCATTGGTGATATTTGTGGTTGATGCAAGTGGAAGCATGGCATTGAACAGGATGCAGAATGCAAAAGGTGCAGCACTGAAGCTTTTGGCTGAGAGTTATACAAGCAGGGATCAGGTGTCTATAATTCCATTCCGTGGAGATGCAGCTGAAGTTCTCCTGCCACCTTCTAGATCAATTGCAATGGCAAGGAAACGTCTTGAGAGGCTTCCATGTGGTGGAGGATCCCCACTTGCTCATGGTCTAACAACGGCTGTTAGGGTTGGATTAAATGCGGAGAAAAGTGGTGACGTTGGACGTATAATGATTGTTGCAATCACTGATGGCAGAGCCAATATATCGTTGAAAAGGTCTACTGACCCTGAAGCTGCAGCTGATGCCTCAAAACCTTCAGCCCAAGAATTGAAGGATGAAATTCTTGAGGTGGCTGGGAAGATATATAAGGCAGGAATGTCTCTGCTTGTCATCGACACTGAGAATAAGTTTGTCTCAACGGGTTTCGCCAAGGAGATTGCTAGAGTTGCCCAAGGGAAGTATTATTATCTGCCAAATGCTTCAGACGCTGTTATCTCATTGGCAACAAAGGAAGCTTTAACAGCTTTTAAAAGTTCATGA 2241 0.4489 MGFALPYTASTAANLPNLQSHSLFAAFRSKTSHSLCTSYRAKRIPKRFPIIRAESENGAPVTSEKNNTNYGRQYFPLAAVVGQDAIKTALLLGATDPGIGGIAISGKRGTAKTVMARGLHAVLPPIEVVVGSIANADPSCPEEWEDGLTECLEYDSAGSIKTRIVKSPFVQIPLGVTEDRLIGSVDVEESVKTGTTVFQPGLLAEAHRGVLYVDEINLLDESISNLLLNVLTEGVNTVEREGISFKHPCRPLLIATYNPDEGAVREHLLDRIAVNLSADIPMSFENRVAAVGIATEFQENTRQVFEMVEEETDNAKTQIILAREYLKDVTISSEQLKYLVIEALRGGCQGHRAELFAARVAKCLAALEGREKVYVDDLKKAVELVILPRSVVTESPPDQQNQPPPPPPPPQNQESGEEQNEEEEQEDDKDEENEQQQEQLPDEFIFDAEGGLVDEKLLFFAQQAQRRRGKAGRAKNVIFSEDRGRYIKPMLPKGPVKRLAVDATLRAAAPYQKLRRAKDSGSSRKVFVEKTDMRAKRMARKAGALVIFVVDASGSMALNRMQNAKGAALKLLAESYTSRDQVSIIPFRGDAAEVLLPPSRSIAMARKRLERLPCGGGSPLAHGLTTAVRVGLNAEKSGDVGRIMIVAITDGRANISLKRSTDPEAAADASKPSAQELKDEILEVAGKIYKAGMSLLVIDTENKFVSTGFAKEIARVAQGKYYYLPNASDAVISLATKEALTAFKSS 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00222 746 Coils Coil 415 440 - -
Phco4g00222 746 CDD vWA_Magnesium_chelatase 544 737 IPR041702 -
Phco4g00222 746 Gene3D - 324 405 - -
Phco4g00222 746 PANTHER MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC 71 746 - -
Phco4g00222 746 MobiDBLite consensus disorder prediction 416 438 - -
Phco4g00222 746 FunFam Mg-protoporphyrin IX chelatase 535 739 - -
Phco4g00222 746 MobiDBLite consensus disorder prediction 398 413 - -
Phco4g00222 746 SMART AAA_5 98 279 IPR003593 GO:0016887
Phco4g00222 746 Gene3D von Willebrand factor, type A domain 546 735 IPR036465 -
Phco4g00222 746 ProSiteProfiles VWFA domain profile. 545 740 IPR002035 -
Phco4g00222 746 Pfam von Willebrand factor type A domain 546 651 IPR002035 -
Phco4g00222 746 SMART VWA_4 543 736 IPR002035 -
Phco4g00222 746 Pfam AAA lid domain 342 400 IPR041628 -
Phco4g00222 746 SUPERFAMILY vWA-like 546 730 IPR036465 -
Phco4g00222 746 NCBIfam magnesium chelatase ATPase subunit D 84 733 IPR011776 GO:0005524|GO:0015995|GO:0016851
Phco4g00222 746 MobiDBLite consensus disorder prediction 393 438 - -
Phco4g00222 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 390 IPR027417 -
Phco4g00222 746 Gene3D - 72 278 IPR027417 -
Phco4g00222 746 Pfam Magnesium chelatase, subunit ChlI 194 262 IPR000523 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00222 Phco-Chr4 1388676 1399879 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00222 4 1388676 1399879 Phco4g00222 4 1388676 1399879 ECH