Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00036 ATGGAGGGAGCGAATAGTGGCGGCGATGGCGATGGCGATAGTGATGGTGGCGATCGTCCATGGCAATCTTACCACACTGTTTACACAACCGCTAAAGCAGGAATGGAAGGGGTGGACAAGGAGAAAGTGCAGAGAGTAGTTTACGAAATGAGTAAAGGATCCAAATATTTTCAAAACGAGGAACGCAAGGAAGCTTTTATTAACCAGAAAATTCAGAACCTGCGAATTCAGTGTGCTAAGCTCACACAAGCAGACCTGGTCCACTATCGCAAGGTGGCTGATAGAAGAATTGTTGAGCTAGAAGCTTCGCGTGACCTTTCGAGGATTTGGTTACATGTAGATATGGATGCTTTCTATGCTGCAGTTGAGACTTTAAGTAACCCTACATTACAAGGAAAGCCTATGGCTGTTGGGAGCATGTCCATGATATCCACTGCCAACTATGAGGCCCGAAAATTTGGGGTTCGTGCTGCCATGCCTGGGTTCATTGCACGTAAGCTATGTCCAGAGTTAATCTTTGTCCCAACAGATTTCAAGAAGTATACTTACTATAGTGATTTGACTAGAAAAGTTTTCCGGATATACGATCCCAATTTCGTTGCTGGTAGCCTGGACGAAGCATACCTTGATATAACTGAAGTTTGCAAAGAAAGGAATGTCAATAGTGAAGAAATTGCCCAAGAACTCAGAGCTGGTGTTTATGAAGAGACTGGTCTCACATGTAGTGCTGGAGTGGCACCAAATCGCTTACTTGCTAAGGTTTGTTCAGACATAAACAAGCCAAATGGACAGTATGTTTTGCCAAATGACCGCATGGCTGTTATGACCTTTGTATCCTCCCTTCCTATCAGAAAGATTGGGGGAATTGGTAAGGTCACAGAACATATTTTAAAGGGAGTTTTTGAAATTAACACATGTGAGCAGATGCTGGAGAAGAGTAGCTACCTTTATGCAGTTCTCTCTCAGCCAACAGCAGAATTTTTTTGCTCTGTAGGTTTAGGTCTTGGGCAGAAAGATTCTCCCCAAGTGAGATTTCGGAAAAGTATTAGTAATGAAAGAACATTTTCTGCCACTGAAGATGAGGTGCTATTGCATAAAAAATTGGTGGAGCTTGCTGAAATGCTATCGGCCGACATGCAGAAAGAGGGTCTGTGTGGGCGAACATTGACTCTTAAGCTGAAAACTGCTTCTTTTGAGGTTCGGACCAGAGCTGTGACTTTACAAAAGTACATCAGCTCGAGTGAGGATATCTTGAAGCATGCTAAGAAGTTGCTAAAAGCTGAACTTCCTATTTCAGTGAGATTGATAGGCCTTAGAGTATCTCAGTTTAATGGAGACAAATGTAGTGCTACGCCTGACCCTACACAGAAGACCATTACCAACTTCATTACTTCAGGAGATGTCAATAGAAATTGTAGTTCTTTTCCAGATGTTGCAGATCTGGACTTTGTCAGTGATGCAGAAACCAATCTTTCCATTGCCAATGGGCAGACAAGTCAACTTGATTGGAGAGATCCTTTTGTTGGTAACTATTTGTCTGATGGAGATCACCAAAGCTGTATTGTCCAGAAAAATGATGGTGTAGAAGAGGTACAAACACCTAGTAATGATGCTACAAGTTCTCACTACAGTGGATTTACAGAAGGATCTACTTCTTTCCAGGGGCAGTTTGAAGGCATAAATGTGATGAATGAGTCTAAGCTACGGGAGGGTGCGAGACTTAATTCTCGTTGTCAGGAGACGACAATGTTGTGGTTGAATGACTACAAATGTTCACTTTGTGGAATAGAACTACCTCCAAGTTTTGTTGAGGAAAGATTGGAACACTCTGATTTTCATCTTGCTGAAAAGCTTCAAAAGGAAGAATCTAGGATTCACCAACCATATGTTCCGAGTCGAAGTCGGAATCAAAAGGATGGAATCACTAGACAGAGCAAATCTAAGAAGCAAAAGTTGTCCAAGAAAGAAGGCAAATATACACCCATTGATTCTTTTTTTGTTAAAAAGTAA 2010 0.4184 MEGANSGGDGDGDSDGGDRPWQSYHTVYTTAKAGMEGVDKEKVQRVVYEMSKGSKYFQNEERKEAFINQKIQNLRIQCAKLTQADLVHYRKVADRRIVELEASRDLSRIWLHVDMDAFYAAVETLSNPTLQGKPMAVGSMSMISTANYEARKFGVRAAMPGFIARKLCPELIFVPTDFKKYTYYSDLTRKVFRIYDPNFVAGSLDEAYLDITEVCKERNVNSEEIAQELRAGVYEETGLTCSAGVAPNRLLAKVCSDINKPNGQYVLPNDRMAVMTFVSSLPIRKIGGIGKVTEHILKGVFEINTCEQMLEKSSYLYAVLSQPTAEFFCSVGLGLGQKDSPQVRFRKSISNERTFSATEDEVLLHKKLVELAEMLSADMQKEGLCGRTLTLKLKTASFEVRTRAVTLQKYISSSEDILKHAKKLLKAELPISVRLIGLRVSQFNGDKCSATPDPTQKTITNFITSGDVNRNCSSFPDVADLDFVSDAETNLSIANGQTSQLDWRDPFVGNYLSDGDHQSCIVQKNDGVEEVQTPSNDATSSHYSGFTEGSTSFQGQFEGINVMNESKLREGARLNSRCQETTMLWLNDYKCSLCGIELPPSFVEERLEHSDFHLAEKLQKEESRIHQPYVPSRSRNQKDGITRQSKSKKQKLSKKEGKYTPIDSFFVKK 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00036 669 FunFam DNA polymerase kappa 248 339 - -
Phco4g00036 669 MobiDBLite consensus disorder prediction 1 22 - -
Phco4g00036 669 Gene3D - 266 339 - -
Phco4g00036 669 ProSiteProfiles UmuC domain profile. 110 290 IPR001126 GO:0006281
Phco4g00036 669 Coils Coil 57 77 - -
Phco4g00036 669 Gene3D - 28 114 - -
Phco4g00036 669 FunFam DNA polymerase kappa subunit 170 265 - -
Phco4g00036 669 Pfam impB/mucB/samB family C-terminal domain 346 446 IPR017961 GO:0003684|GO:0006281
Phco4g00036 669 Gene3D - 115 265 IPR043128 -
Phco4g00036 669 SUPERFAMILY DNA/RNA polymerases 85 336 IPR043502 -
Phco4g00036 669 MobiDBLite consensus disorder prediction 623 669 - -
Phco4g00036 669 Pfam impB/mucB/samB family 113 257 IPR001126 GO:0006281
Phco4g00036 669 CDD PolY_Pol_IV_kappa 111 443 IPR022880 GO:0003887
Phco4g00036 669 FunFam Polymerase (DNA directed) kappa 120 172 - -
Phco4g00036 669 Hamap DNA polymerase IV [dinB]. 107 459 IPR022880 GO:0003887
Phco4g00036 669 PIRSF DNA_pol_eta 512 669 - -
Phco4g00036 669 PIRSF DNA_pol_eta 102 224 - -
Phco4g00036 669 PIRSF DNA_pol_eta 219 465 - -
Phco4g00036 669 FunFam DNA polymerase IV 343 450 - -
Phco4g00036 669 Pfam Ubiquitin-Binding Zinc Finger 588 621 IPR041298 -
Phco4g00036 669 Gene3D - 344 449 IPR036775 GO:0003684|GO:0006281
Phco4g00036 669 FunFam DNA polymerase kappa subunit 27 117 - -
Phco4g00036 669 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 344 441 IPR036775 GO:0003684|GO:0006281
Phco4g00036 669 ProSiteProfiles Zinc finger UBZ3-type profile. 584 621 IPR041298 -
Phco4g00036 669 Gene3D - 127 175 - -
Phco4g00036 669 PANTHER DNA REPAIR POLYMERASE UMUC / TRANSFERASE FAMILY MEMBER 21 667 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00036 Phco-Chr4 240668 245301 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00036 4 240668 245301 Phco4g00036 4 240668 245301 ECH