Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00034 ATGGGCATCCGATCGGTGTTTGACGGCGGCGAGCTGAGAAGGGAATTTGAGAAAAGGGGAATTGACGGAAAATTCGTCGGAGTAATATGGAAACACGTGATTGGGAATAATGCGAAGGGAGAAAGGGAAGAATGGAATTGGGAGAAACAAGTGCCGTCGTTACCTTCTTCAGCATACGCTGTCCTTCGTTCCAACTTCGGAGGAGCAAACCCTCTCTCTTCTTCTCTTCACTCCGTTTTCCACTCTTCCGACAACCTCACCTCCAAGCTCCTCATCAAGCTCAAGAATGGAGCATTCGTGGAGGCTGTGATAATGAGGTATGATACTCGTTTGGGCATATACGCTGGCAAACCCCGTCCCGGTGGGCTACGAGCAACTTTGTGTATTTCATCGCAGGTAGGATGCAAAATGGGTTGCAAATTCTGTGCCACTGGATCCATGGGATTCAAAAATAACCTATCCTCCGGGGAAATTGTGGAACAGCTCGTCCATGCTTCTGCTTTCTCACAAATCCGTAATGTTGTCTTCATGGGAATGGGAGAGCCTCTCAACAACTATTCTGCTGTGGTAGAAGCGGTTCGCATCATGACTGGATTGCCATTTCAGTTGTCCTTGAAAAGGATTACCGTATCAACGGTTGGTATCATTCATGCTATCAACAAGCTTCATAATGACCTGCCTGGTTTGAACTTGGCAGTCTCACTGCATGCACCAGCCCAAGACATCCGTTGTCAGATAATGCCTGCTGCTCGTGCTTTCCCTTTGGAAAAACTTATGAATTCACTGCAAGAATATCAAAGAAAAAGTCTGCAGAAAATACTGATTGAATACATAATGCTTGACGGGGTGAATGATGAAGAGCAGCATGCCCACCAATTGGGAAAACTACTAGAGACATTTCGAGTGGTAGTGAACTTAATACCTTTCAACCCTATCGGTATCTTGAGTCAATTCAAACCTACCAGTGAGCAGAAGGTCTCAAATTTTCAGAAAATTCTCAGAGGTACATATAATATTCGAACAACAGTTAGGAAACAGATGGGTCAAGACATAAGTGGTGCTTGTGGGCAATTGGTGGTTAACATACCAGACAAGTCTCTTGCCAGTGCAGAACCCCTGACAGACATAGAAGATCTTGTTATTTGA 1146 0.4503 MGIRSVFDGGELRREFEKRGIDGKFVGVIWKHVIGNNAKGEREEWNWEKQVPSLPSSAYAVLRSNFGGANPLSSSLHSVFHSSDNLTSKLLIKLKNGAFVEAVIMRYDTRLGIYAGKPRPGGLRATLCISSQVGCKMGCKFCATGSMGFKNNLSSGEIVEQLVHASAFSQIRNVVFMGMGEPLNNYSAVVEAVRIMTGLPFQLSLKRITVSTVGIIHAINKLHNDLPGLNLAVSLHAPAQDIRCQIMPAARAFPLEKLMNSLQEYQRKSLQKILIEYIMLDGVNDEEQHAHQLGKLLETFRVVVNLIPFNPIGILSQFKPTSEQKVSNFQKILRGTYNIRTTVRKQMGQDISGACGQLVVNIPDKSLASAEPLTDIEDLVI 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00034 381 PIRSF Cfr 11 374 IPR004383 GO:0006364|GO:0008173
Phco4g00034 381 PANTHER 23S RRNA METHYLTRANSFERASE 7 367 IPR040072 -
Phco4g00034 381 Pfam 4Fe-4S single cluster domain 134 218 - -
Phco4g00034 381 CDD Radical_SAM 134 313 - -
Phco4g00034 381 ProSiteProfiles Radical SAM core domain profile. 121 350 IPR007197 GO:0003824|GO:0051536
Phco4g00034 381 FunFam 23S rRNA methyltransferase 74 365 - -
Phco4g00034 381 SFLD methyltransferase (Class A) 80 365 - -
Phco4g00034 381 SFLD adenosine C2 methyltransferase (RlmN-like) 80 365 IPR004383 GO:0006364|GO:0008173
Phco4g00034 381 Gene3D Aldolase class I 75 366 IPR013785 -
Phco4g00034 381 SUPERFAMILY Radical SAM enzymes 126 325 - -
Phco4g00034 381 Pfam Radical SAM superfamily 130 288 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00034 Phco-Chr4 233410 235471 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00034 4 233410 235471 Phco4g00034 4 233410 235471 ECH