Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00026 ATGTGTGATTTGTACTCCACGTTCATGGCTGTGGCAAAAGCCAAGGACTGGTTGGTAAGTGAGCTTGCACATGGGAAAACTATTATCTTCGCTTTTGCCCTGGAATTTAAGGTTCTAAACCGTTATAGTGTGGCTATGGCTGTAGCTATGTCTCTGTCTTTTGGGCTCTTGTCTTCCTCCATTCTCCCTCCAGAAGCCCACACTCTGAGCTTGACGAGGCCTTCGCGTTCTGCTTCTGCTTCTGCTTCTGGACTGCGCATGGTGCGAACCGTTACCTCTTGCACCGTCTCTCACTCGGAGCAAGGAACCCGCAAAATCCGTGGCATCATGAAACCCCGCAGAGTGACTCCTGAGATGGCTGCCCTCGTGGGCGCTCAAGAGATTGCCAGAACCCAAGCCCTCAAACGCATTTGGGCTTATATCAAGGACAACAATCTCCAGGACCCTGAAGACAAGAGGACTATAAATTGTGATGAGAAGCTGAAGAAGATATTTGATGGGAGAGATCGAGTTGGTATGCTAGATGTTGCTCGCTTGATTAGCCCTCACTTCCTTAAAGCTGAAGTTTAA 570 0.4895 MCDLYSTFMAVAKAKDWLVSELAHGKTIIFAFALEFKVLNRYSVAMAVAMSLSFGLLSSSILPPEAHTLSLTRPSRSASASASGLRMVRTVTSCTVSHSEQGTRKIRGIMKPRRVTPEMAALVGAQEIARTQALKRIWAYIKDNNLQDPEDKRTINCDEKLKKIFDGRDRVGMLDVARLISPHFLKAEV 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00026 189 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 97 187 - -
Phco4g00026 189 Gene3D SWIB/MDM2 domain 103 189 IPR036885 -
Phco4g00026 189 ProSiteProfiles SWIB/MDM2 domain profile. 108 186 IPR003121 -
Phco4g00026 189 CDD SWIB-MDM2_like 113 184 - -
Phco4g00026 189 Pfam SWIB/MDM2 domain 111 184 IPR003121 -
Phco4g00026 189 SMART swib_2 109 189 IPR019835 -
Phco4g00026 189 SUPERFAMILY SWIB/MDM2 domain 105 186 IPR036885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00026 Phco-Chr4 195152 199837 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Phco4g00026 SWIB 5.7e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00026 4 195152 199837 Phco4g00026 4 195152 199837 ECH