Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00021 ATGAGTTTAGACTCGTCTCGCTCAGCTAATTCCAAACGAAGTTTCTCTAATTCTATATCTTCCAACCGCTCCAACGACAGCAGTAAAAAGAACAGCAAAAAGACGAAGACAATCACCAACCAGAAAACCCTAGGCGCTGCCTGGGGCTCAAATGCAAGTTCTCGCTCTTCCTCACGAAATTCCGCTTTCTCCGGTTTCACCAGTTATATGACAGAGAAGAATCGGAAACTACACAACCAGTTTGACGCCGAGGCTTCCACTTCGTCTTTAAGTGGCTCTACTTCTGGGAAGCCTATTTTCAGTGGAGTTTCAATTTTTGTTGATGGTTTCACGGTTCCTTCCAACCAGGAACTGCGGAGCTACATGCTTAAGTATGGTGGAAGATTTGAGAATTATTTCTCTAGACATCGTGTAACACATATCATCTGCAGTAATCTGCCTGATAGTAAAGTTAAGAACCTCAGAGCCTTCAGTGCACGGTTGCCAGTGGTGAAACCCACTTGGATTTTAGATTCTGTTGCCGCTAATAGACTTCTGAGCTGGGTACCTTACCAACTCGACCAACTAGCTAATAAGCAATCAAAACTGTCGGCCTTCTTCACATTCAAAAGTAGTAAAATGTCAGAGGATGCTTTAACAAACTCCCTTTGTCAAGTAGTGTCAGATGTTGAAGATTCATCTATTAGGGTTGGTCAAACAGATTCTGAGGATAGAAACTTATCCAAAGTTGGGGAGATGAGTGAACATAGTGGGCAAATCAGTGCTGCTGCATCTGATGATATTGTCTTGGAGAATAGAAATGCAATTATGACGGAGGAGTTGAATAGTGTTAGAGTTAAGTTTGATGAAGACCAAGCAGCTGGAAGCAATGCTGCTACGAAAGATAAGAGTAATGTCAAAGGTGAACTTGAACCCACTAATCAAGCACCTTCTACATCATTTAGTTCTCACTGCTCAGACGAGCAGAATGCAAGAGAATTTCCAAGTTCTTCAGGCACTAAGCCTTTTAAACAGTGTCATTCAACTTTCGCAGACCCTAATTTCGTGGAAAATTATTTTAAGAGCTCACGACTCCACTTTATAGGAACCTGGCGAAATCGGTATCGAAAGCGTTTTTCTGCCTCGTCTTCTGGGATTAAGAATGAAAATTCTATTACTAGTGCCTCTAATATTTCTCATAATTCAGTTATTATCCATGTTGACATGGACTGCTTTTTTGTTTCAGTTGTTATCAGGAACCACCCTGAATTGTTGGATCAGCCTGTAGCTGTATGTCATTCAAATAATTCCAATGGAACTTCTGAGATTTCTTCTGCAAACTACCCAGCTCGTAGTCATGGTATTAGGGCTGGTATGTTTGTTCGAGATGCCAAGGCTCTTTGTCCCCACCTGGTTATCTTTCCTTATAACTTTGAAGCTTATGAGGAAGTAGCTGATCAATTTTATAGTATATTGCACCAGCATTGCAACAAAGTGCAGGCTGTAAGCTGTGATGAAGCATTTTTAGATGTCACAGATTCAGAGGTTGAAGATCCCAAACTTTTAGCTTCATCTATTAGAGAAGAGATCTATAAGACCACTGGATGTACAGCTAGTGCTGGTATAGCTGGAAATATGCTTATGGCTCGTATTGCTACTAGAACTGCAAAACCAAATGGTCAATATCACATAACTACAGAAAAGGTTGAAGATCATTTATACCAACTCCCAATTAATTCACTTCCAGGAATAGGGCATGTTTTGCAGGAGAAATTGAAGAAACAGAATATTTACACTTGTGGACAATTGCGCATTATTTCCAAGGCCTCACTGCAGAGGGACTACGGTATAAAAACAGGAGAAATGCTGTGGAATTATAGCAGAGGAATTGATAACCGGTTAGTTGGGAACTTTCAGGAAAGCAAGACTGTTGGTGCTGATGTAAATTGGGGTGTAAGATTCAACGATATAAAAGATTGTGAACACTTCCTAATAAATCTTTGCAAGGAGGTCTCATTACGATTGCAGTGTTGTGGAGTGCAGGGGCGCACTTTCACTCTGAAGATCAAAAAGAGAAGGAAAGGTGCTGACGAACCTGCAAAGTTTATGGGCTGTGGGGACTGTGAAAATCTGAGTCATTCTGTAACGGTTCCTCTTGCTACTGATAATGTGGAAATACTCCAAAGAATTGTAAAGCAGCTGTTTGGATGTTTTTACATAGATGTCAAGGAGATTCGAGGTATTGGTTTGCAAGTTTCCAGACTTGAAAGTGCAGAAGCTTCTAAACAAGGTACAACAAAATATACTTTGAAATCATGGCTCACTTCTGGATATGCTAGTGTTGGAAATCAGAAATATCCTATAGGTCATGATAAGCAAAGCAGAGATAACACTTCCCGTCGTGCATCTGTAAATCTGCCAGAGTCTTCGGTGGAAATGGACAATAAAATACCAAATAATGAAGCTAGTACTGACCCAATTTCAACACCCCCTCCTTTATGTGACCTTGACATGGAAGTTATAAGGAATCTTCCCCCAGAAGTGTTTTCAGAATTAAATGAAATTTACAGAGGGAAGTTAATTGACTATATTGCTGATTGGAAAGACACAAGTGAGAGTTCTAGCCCTTCAGGAAACTCATTTTTGGAGCAAAAAGCAATAAACAATGAAGAGGAACTTTCCTATTCTGAGCCGATTCCTCAAAGCAATTTATCATCAAAAAATAAGGCAAAGCAGTATGTGTTGGGCACTAGTGAAGGCGAAGCTATAACATATTCAGCGTGTGGACCCAATTTCAAGGTCACACACCATTCTAGTTTTGAAAATAATGATTTATTGCCTTCTTCTTTGAGTCAAGTTGATGGTTCAGTGTTTCAACAATTGCCTGAGGATTTGAAAGCTGACATTGTTGAGCAGCTTCCTGCACACAGAAGGCCAGATATTTGCTCCAATGTTGTGATCCCTCCTCTTGAAAACAATTTGTTGTCAGTAGGCGTTGAAATTTCTAATAATTCTCCTATATCTAGTTATAATGACAGTCTATGGGTTGGAAATCCTCCAAATTGGGTTGGGAAGTTCAAAGGTAGCAGTTGCTTAATTTTAAAGAAACTTGCAGAAATGTATTTCAGATCAGGGTTGGAAAACACATTATCTTCAGTTTTGCACCAAAATATATCTGAATTCTGTGAGCTAAATCTGACCCAGCAGTTTTCTGATGAAACTGTTAACATTATGTGTGAGCTACTGAGGCAGTATATCAAAGTGAAGATAGAAAGAGATATTGAAGAGATTTATATTTGTTTTCGGCTTCTGAAAAGGTTTGCAGCTAAGTCCCAATTTTTCCTACAAGTATATAATAGTGTATATCCTTACCTTCAGGCAGCTGTTGATGACAATTATGGAGGGACTTTACTTTTACCATCATAG 3405 0.3959 MSLDSSRSANSKRSFSNSISSNRSNDSSKKNSKKTKTITNQKTLGAAWGSNASSRSSSRNSAFSGFTSYMTEKNRKLHNQFDAEASTSSLSGSTSGKPIFSGVSIFVDGFTVPSNQELRSYMLKYGGRFENYFSRHRVTHIICSNLPDSKVKNLRAFSARLPVVKPTWILDSVAANRLLSWVPYQLDQLANKQSKLSAFFTFKSSKMSEDALTNSLCQVVSDVEDSSIRVGQTDSEDRNLSKVGEMSEHSGQISAAASDDIVLENRNAIMTEELNSVRVKFDEDQAAGSNAATKDKSNVKGELEPTNQAPSTSFSSHCSDEQNAREFPSSSGTKPFKQCHSTFADPNFVENYFKSSRLHFIGTWRNRYRKRFSASSSGIKNENSITSASNISHNSVIIHVDMDCFFVSVVIRNHPELLDQPVAVCHSNNSNGTSEISSANYPARSHGIRAGMFVRDAKALCPHLVIFPYNFEAYEEVADQFYSILHQHCNKVQAVSCDEAFLDVTDSEVEDPKLLASSIREEIYKTTGCTASAGIAGNMLMARIATRTAKPNGQYHITTEKVEDHLYQLPINSLPGIGHVLQEKLKKQNIYTCGQLRIISKASLQRDYGIKTGEMLWNYSRGIDNRLVGNFQESKTVGADVNWGVRFNDIKDCEHFLINLCKEVSLRLQCCGVQGRTFTLKIKKRRKGADEPAKFMGCGDCENLSHSVTVPLATDNVEILQRIVKQLFGCFYIDVKEIRGIGLQVSRLESAEASKQGTTKYTLKSWLTSGYASVGNQKYPIGHDKQSRDNTSRRASVNLPESSVEMDNKIPNNEASTDPISTPPPLCDLDMEVIRNLPPEVFSELNEIYRGKLIDYIADWKDTSESSSPSGNSFLEQKAINNEEELSYSEPIPQSNLSSKNKAKQYVLGTSEGEAITYSACGPNFKVTHHSSFENNDLLPSSLSQVDGSVFQQLPEDLKADIVEQLPAHRRPDICSNVVIPPLENNLLSVGVEISNNSPISSYNDSLWVGNPPNWVGKFKGSSCLILKKLAEMYFRSGLENTLSSVLHQNISEFCELNLTQQFSDETVNIMCELLRQYIKVKIERDIEEIYICFRLLKRFAAKSQFFLQVYNSVYPYLQAAVDDNYGGTLLLPS 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00021 1134 Pfam BRCT domain, a BRCA1 C-terminus domain 97 184 IPR001357 -
Phco4g00021 1134 SUPERFAMILY BRCT domain 54 188 IPR036420 -
Phco4g00021 1134 MobiDBLite consensus disorder prediction 290 336 - -
Phco4g00021 1134 MobiDBLite consensus disorder prediction 792 820 - -
Phco4g00021 1134 CDD BRCT_Rev1 99 186 - -
Phco4g00021 1134 FunFam DNA repair protein REV1 455 557 - -
Phco4g00021 1134 FunFam DNA repair protein REV1 414 468 - -
Phco4g00021 1134 FunFam DNA repair protein REV1 92 187 - -
Phco4g00021 1134 MobiDBLite consensus disorder prediction 229 244 - -
Phco4g00021 1134 MobiDBLite consensus disorder prediction 37 61 - -
Phco4g00021 1134 FunFam DNA repair protein REV1 634 755 - -
Phco4g00021 1134 Gene3D BRCT domain 89 186 IPR036420 -
Phco4g00021 1134 CDD PolY_Rev1 348 748 - -
Phco4g00021 1134 SMART BRCT_7 97 176 IPR001357 -
Phco4g00021 1134 PANTHER DNA REPAIR PROTEIN REV1 1 1130 - -
Phco4g00021 1134 Gene3D - 346 386 - -
Phco4g00021 1134 Gene3D - 633 756 IPR036775 GO:0003684|GO:0006281
Phco4g00021 1134 MobiDBLite consensus disorder prediction 287 336 - -
Phco4g00021 1134 ProSiteProfiles BRCT domain profile. 95 186 IPR001357 -
Phco4g00021 1134 SUPERFAMILY Lesion bypass DNA polymerase (Y-family), little finger domain 633 746 IPR036775 GO:0003684|GO:0006281
Phco4g00021 1134 MobiDBLite consensus disorder prediction 228 253 - -
Phco4g00021 1134 MobiDBLite consensus disorder prediction 1 61 - -
Phco4g00021 1134 Pfam impB/mucB/samB family C-terminal domain 635 755 IPR017961 GO:0003684|GO:0006281
Phco4g00021 1134 Pfam impB/mucB/samB family 400 546 IPR001126 GO:0006281
Phco4g00021 1134 SUPERFAMILY DNA/RNA polymerases 389 628 IPR043502 -
Phco4g00021 1134 MobiDBLite consensus disorder prediction 1 26 - -
Phco4g00021 1134 Gene3D - 397 558 IPR043128 -
Phco4g00021 1134 MobiDBLite consensus disorder prediction 778 823 - -
Phco4g00021 1134 ProSiteProfiles UmuC domain profile. 397 578 IPR001126 GO:0006281
Phco4g00021 1134 PIRSF REV1 5 1127 IPR012112 GO:0003684|GO:0006281|GO:0016779|GO:0042276
Phco4g00021 1134 Gene3D - 569 623 - -
Phco4g00021 1134 Gene3D - 414 468 - -
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00021 4 168025 177523 Phco4g00021 4 168025 177523 ECH