Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco4g00018 ATGGCGATGGCGGCAAAAGCAGAATGGATGTTGAGAGCGTTGAGGAGTGGTCGGCGGCAGATGTCGGTGGGAAGGCAGTGGGAGGAGAAATGGCTTACGCTGCCTCCGGTGGCTACGAGTGGGACTGTGGAGGTGAAGGGAAAGACGAAGGGAAAGGGAAACGAAGTCTCCTCCACTCCCACCACCGCCCTCAAATGGATTGTTCGGTGCTGCCCAAGCCTCCCCATATCCCTTCTGCACAAGCTTTTCCGTCTAAGACAGGTTCGACTTCTCTCTCCTCCTCACATGGAAACACTCAAAAGGGTCGCAGCTAAAGACACCTTGAACTCTGGAGATCGGATTTTACTTCCTCAATCTGTTCAACCAAAACCAACGCCTATACACAAACCTCATTCTCCTCTCACTCCCCAACAAATCAACTTCATCCGCACTCTTGTTATATACAAGGATCCTGCCATTCTTGTCCTCAACAAACCTCCAGGAATGCCTGTGCAGGGTGGCATTAATATCAAACACAGCTTAGATGTAGTGGCTGCTGCATGTTTAAATTATGAATACTCTGAACCTCCTCGTCTGGTGCATAGACTGGACAGAGACTGTTCAGGCATTCTGGTGATGGGAAGAACACAGACAAGTACTACAGTCCTGCATTCCATCTTTCGCGAGAAAACATCTAGGGCATTAGATGATACTGGCGAAGAGAAGAGAATACTACAAAGAAGGTATTGGGCACTTGTCCTTGGATGTCCTAGACGTTCAAAGGGGTTGGTCACTGCTTCACTGGGTAAGGTGGTAGTTGACAATGGAAAATCTGATCGAATAACTGTAGTTGATAATTCTACATCATTGTCATCACAGCATGCCATTACAGAGTACCGAGTGATTGCATCATCATCACAAGGTTACACATGGTTGGAGTTGTCCCCTTTAACTGGTAGAAAACACCAGCTTCGAGTGCACTGTGCTGAGGTGTTAGGTACACCAATAGTTGGGGACTACAAGTATGGATGGCAAGCTCACAGGAAGTGGGGAGATTTTAATTTGTCTAATGTGGAGGACTCTTGTGAAGAGCTTCTCAAGGAAGAAACACTCCCCTTTGGCCTCAATTTGAACAATGGGAGCATCTCCGAGAATCATCCTCGTTTACATCTTCATTGCAAGCAAATAGTCTTGCCCAATATATCTGAAGCACTGCAAAATGTGCAATCATTTTCCAATTGTGATCTTTCACTAGTGGAAGGGCTTGAGTTGGTCGCGGATTTGCCTCCATACATGCAAAGAAGTTGGGATGTCACAAATTATTGA 1305 0.4651 MAMAAKAEWMLRALRSGRRQMSVGRQWEEKWLTLPPVATSGTVEVKGKTKGKGNEVSSTPTTALKWIVRCCPSLPISLLHKLFRLRQVRLLSPPHMETLKRVAAKDTLNSGDRILLPQSVQPKPTPIHKPHSPLTPQQINFIRTLVIYKDPAILVLNKPPGMPVQGGINIKHSLDVVAAACLNYEYSEPPRLVHRLDRDCSGILVMGRTQTSTTVLHSIFREKTSRALDDTGEEKRILQRRYWALVLGCPRRSKGLVTASLGKVVVDNGKSDRITVVDNSTSLSSQHAITEYRVIASSSQGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQAHRKWGDFNLSNVEDSCEELLKEETLPFGLNLNNGSISENHPRLHLHCKQIVLPNISEALQNVQSFSNCDLSLVEGLELVADLPPYMQRSWDVTNY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco4g00018 434 CDD PseudoU_synth_RluA_like 153 345 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phco4g00018 434 Pfam RNA pseudouridylate synthase 153 322 IPR006145 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phco4g00018 434 SUPERFAMILY Pseudouridine synthase 141 393 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Phco4g00018 434 Gene3D Pseudouridine synthase 137 403 - -
Phco4g00018 434 PANTHER MITOCHONDRIAL RNA PSEUDOURIDINE SYNTHASE 42 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco4g00018 Phco-Chr4 154783 158509 Dispersed/Tandem
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco4g00018 4 154783 158509 Phco4g00018 4 154783 158509 ECH