Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02847 ATGAGTAACGAGTTGGAGGGGTATGAGCGTAAATACTGTCAGCTTTCAGCAAAACTATCAAAAGCATGCATTGAAGCTGCTGCTACTCATGGAGAGCTAAAGAAACAAAAAGTTTCAGAAATAAAGGAGGGAATTGAGGAGGCAGAAGCTTTGATTCGAAAAATGGACCTTGTGGCAAGAAGTTTCCAGTCAGATTTTAAGGCTGTGCTTCTTGCTAAGGTGAGGGAGTACAAAGCAGATCTGAACAACATTAAAAGAGAAGTGAAGAAAATTGTATCTGGTGTGTTAAACCCTTCTGCACGGGATGAGTTGTTAGAATCGAACATGACAAATGTTATGAAGGCATCAACTGATCACAGAGAAAGATTAATGACATCAACAGAAAGGTTGAACAGGTCTAGTGACGGAATTAAGGACAGTAGAAGAACAATGTTGGAAACAGAAGATGTGGGCGTTATGATTCTTCAAGATCTGCATTCCCAGAGACAATCTCTGCTGCATGCACATCACACGCTTCATGGAGTGGATGATAACATAGGCAAGAGCAAGAAAATTTTGTCTAACATATCAACCAGGATGAACAGGAACAAGTGTATCATCAGCATCGTTGTTGTGGTCCTGATAGTTGTTATCACCTTGATTCTGTACTTCAAGCTTTCTTAA 663 0.4012 MSNELEGYERKYCQLSAKLSKACIEAAATHGELKKQKVSEIKEGIEEAEALIRKMDLVARSFQSDFKAVLLAKVREYKADLNNIKREVKKIVSGVLNPSARDELLESNMTNVMKASTDHRERLMTSTERLNRSSDGIKDSRRTMLETEDVGVMILQDLHSQRQSLLHAHHTLHGVDDNIGKSKKILSNISTRMNRNKCIISIVVVVLIVVITLILYFKLS 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02847 220 Coils Coil 67 87 - -
Phco3g02847 220 Gene3D - 117 197 - -
Phco3g02847 220 PANTHER VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED 7 216 - -
Phco3g02847 220 Pfam Snare region anchored in the vesicle membrane C-terminus 128 193 - -
Phco3g02847 220 PIRSF Membrin-2 3 218 IPR027027 GO:0005484|GO:0005794|GO:0016192
Phco3g02847 220 FunFam Vesicle transport through interaction with t-SNAREs homolog 1A 1 98 - -
Phco3g02847 220 Gene3D - 1 95 IPR038407 -
Phco3g02847 220 SUPERFAMILY SNARE fusion complex 130 189 - -
Phco3g02847 220 CDD SNARE_Vti1 127 188 - -
Phco3g02847 220 SUPERFAMILY t-snare proteins 6 93 IPR010989 GO:0016020|GO:0016192
Phco3g02847 220 FunFam Vesicle transport through interaction with t-SNAREsB 117 197 - -
Phco3g02847 220 Pfam Vesicle transport v-SNARE protein N-terminus 12 90 IPR007705 GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02847 Phco-Chr3 54872653 54875898 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02847 3 54872653 54875898 Phco3g02847 3 54872653 54875898 ECH