Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02699 ATGGGGTCTATGAACTTGTTGGGGTTTTCTCTCTCTCCTCAAGAACACCCTTCTAGTCAAGATCACTCTCAACCGGCACCTTCTCGTTTTGGCTTCAACCCCGATGGAATCTCAAGCACTGATGTTGTAGGAGACTGTTTTGATCTCACTTCTGACTCAAGTCCTCATTTACTCAACCTTCCTTCTTATGGCATATATGAAGCATTTCACAGAAACAATAGCATTCACACCACTCAAGATTGGAAGGAGAACTACAACAGTCAAAACTTGCTACTGGGAACTTCATGCAGTAACCAAAACATGAACAACAATCAACAACAACAGCCAAAGCTTGAAAACTTTCTGGGCGGACATTCATTTGGAGAACATGACCAAACCTACGGTGGTAACTCAGGCTCAACAGATTACATGTTTCCGTCTCAGCCAGTAGCAACCAGTGGGGGCAGTAGTACAAGCAATAGTATAGGGTTATCCATGATAAAGACATGGTTGAGGAACCAACCACCACACTCAGAAAACAACAATGAAAGTGCTGGGAACAGTGGTAGTGTGCAGACTCTATCACTTTCTATGAGTACTGGTTCACAATCTAGCACTTCACTTCCCATTCTCTCTGCAAGTGTGGAAAATGGAGAGAGTTCTTCAGATAACAAACAACCACTAACCACTGCTGCACTTGATACCACTCCAACGGGAGCCAGTGAATCTGCACCCAGAAAGTCCATTGACACTTTTGGACAAAGAACTTCTATATACCGTGGTGTAACAAGGCATAGGTGGACTGGGAGGTACGAGGCTCATCTGTGGGATAACAGCTGTAGAAGAGAGGGACAAACTCGCAAAGGAAGACAAGGAGGTTATGACAAAGAAGAAAAGGCAGCTAGAGCCTATGATTTGGCAGCACTAAAATACTGGGGAACAACTACAACAACAAATTTTCCTATTAGCCACTATGAGAAAGAGGTGGAAGAAATGAAGCACATGACCAGACAAGAGTACGTTGCTTCATTGAGAAGGAAGAGTAGTGGGTTTTCTCGCGGTGCATCCATTTATCGAGGAGTAACAAGACACCATCAACATGGTAGATGGCAAGCAAGGATTGGGAGAGTTGCAGGCAACAAGGATCTCTACTTGGGAACATTCAGCACTCAAGAAGAAGCCGCAGAGGCTTATGATGTTGCGGCCATCAAATTCCGAGGACTGAGTGCTGTTACAAACTTTGACATGAGCAGATATGATGTCAAGAGCATACTTGAGAGCACTACCTTGCCCATTGGTGGTGCTGCCAAGCGTTTGAAGGATATGGAACATGTGGAACTGAACGTGGAAGGTCATAGAACAGACCAAGAAGATCATAGCAGCAGCATCTTGAACTCTCACCTAACTCAAGGAATCAGTAATAACTATGCAGGAGGAACAACTCATCATCATAACTGGCACAACAGTCTTTCATTTCACCAACCTCAACCTTGCACCACCATACACTACCCTTACGGACAGAGACTATGGTGCAAGCAAGAACAACAAGACAATTCTGATACCTCTCATCCTTTGTCTTATCCTGATATTCATCAACTACAGCTAGGGAATAATGGCACACACAACTTTTTTCACACAAGTTCCGGGTTGCACCCTATCATGAACATGGATTCTGCTTCCATTGACAATAGCTCTTCATCTAACTCGGTAGTTTATGATGGTTATGGAGGAGGTGGGGGCTATGTGATGCCTATGGGTGCTACTACTGTTGTTGCAAGTGACGGTGATCATAATCAAAGAGGCAATAATGGTTTTGGTGATAATGAGATGAAGACTCTTGGTTATGAAAGTGTTTATGGATCTAATGATGCTTATCATGCACATGCAAGGAACCTGTATTATCTTTCCCAACAGCAATCATCTTCTGTAGATGCAGTCAAGGCTAGTGCATATGATCAAGGAGGTTCTGCATGCAACACTTGGGTTCCAACTGCTATTCCAACGCTTGCACCAAGGTCTACCAGTATGGCTCTATGCCATGGTGCTCCACCCTTCTCGTTATTGCATGAATAG 2052 0.4401 MGSMNLLGFSLSPQEHPSSQDHSQPAPSRFGFNPDGISSTDVVGDCFDLTSDSSPHLLNLPSYGIYEAFHRNNSIHTTQDWKENYNSQNLLLGTSCSNQNMNNNQQQQPKLENFLGGHSFGEHDQTYGGNSGSTDYMFPSQPVATSGGSSTSNSIGLSMIKTWLRNQPPHSENNNESAGNSGSVQTLSLSMSTGSQSSTSLPILSASVENGESSSDNKQPLTTAALDTTPTGASESAPRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQGGYDKEEKAARAYDLAALKYWGTTTTTNFPISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIGGAAKRLKDMEHVELNVEGHRTDQEDHSSSILNSHLTQGISNNYAGGTTHHHNWHNSLSFHQPQPCTTIHYPYGQRLWCKQEQQDNSDTSHPLSYPDIHQLQLGNNGTHNFFHTSSGLHPIMNMDSASIDNSSSSNSVVYDGYGGGGGYVMPMGATTVVASDGDHNQRGNNGFGDNEMKTLGYESVYGSNDAYHAHARNLYYLSQQQSSSVDAVKASAYDQGGSACNTWVPTAIPTLAPRSTSMALCHGAPPFSLLHE 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02699 683 MobiDBLite consensus disorder prediction 165 240 - -
Phco3g02699 683 CDD AP2 349 410 IPR001471 GO:0003700|GO:0006355
Phco3g02699 683 ProSiteProfiles AP2/ERF domain profile. 350 408 IPR001471 GO:0003700|GO:0006355
Phco3g02699 683 MobiDBLite consensus disorder prediction 1 27 - -
Phco3g02699 683 SMART rav1_2 350 414 IPR001471 GO:0003700|GO:0006355
Phco3g02699 683 SMART rav1_2 251 320 IPR001471 GO:0003700|GO:0006355
Phco3g02699 683 PRINTS Ethylene responsive element binding protein signature 252 263 IPR001471 GO:0003700|GO:0006355
Phco3g02699 683 PRINTS Ethylene responsive element binding protein signature 390 410 IPR001471 GO:0003700|GO:0006355
Phco3g02699 683 SUPERFAMILY DNA-binding domain 349 410 IPR016177 GO:0003677
Phco3g02699 683 Gene3D AP2/ERF domain 350 410 IPR036955 GO:0003700|GO:0006355
Phco3g02699 683 Gene3D AP2/ERF domain 251 316 IPR036955 GO:0003700|GO:0006355
Phco3g02699 683 FunFam AP2-like ethylene-responsive transcription factor ANT 250 316 - -
Phco3g02699 683 SUPERFAMILY DNA-binding domain 250 316 IPR016177 GO:0003677
Phco3g02699 683 CDD AP2 250 316 IPR001471 GO:0003700|GO:0006355
Phco3g02699 683 Pfam AP2 domain 350 400 IPR001471 GO:0003700|GO:0006355
Phco3g02699 683 Pfam AP2 domain 251 306 IPR001471 GO:0003700|GO:0006355
Phco3g02699 683 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 101 505 - -
Phco3g02699 683 FunFam AP2-like ethylene-responsive transcription factor 349 410 - -
Phco3g02699 683 ProSiteProfiles AP2/ERF domain profile. 251 314 IPR001471 GO:0003700|GO:0006355
Phco3g02699 683 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02699 Phco-Chr3 53486269 53490285 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Phco3g02699 AP2 3.6e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02699 3 53486269 53490285 Phco3g02699 3 53486269 53490285 ECH