Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02516 ATGTGGAAGGTTGTGCGATTCGCGGCGTCCAGATCGCGGAAATTCTCCACGGCGATTCCCGGGCCGTGCAAGGTCCACAAGCGCGGTACTGATATTCTCCATGATCCTTGGTTCAACAAGGATACTGGGTTTCCCATAACTGAAAGAGATCGATTGGGCCTTCGGGGCCTTCTTCCTCCTCGTGTCATTTCATTTGAGCATCAATATGATCGGTTCATGGATTCCTATAGATCTTTGGAGAAGAATACAGAGGGCCAAGCAGATAAATTTGTTTCTTTATCCAAGTGGAGGATCTTAAATAGGTTGCATGACAGGAATGAGATTCTGTATTACCGAGTTCTTATCGATAACATCAAAGAGTTTGCTCCAATAATCTATACTCCTACAGTTGGATTAGTGTGTGAAAATTATTCAGGGTTATTTAGACGCCCGCGTGGAATGTATTTTAGTGCCAAAGATAAAGGAGAGATGATGTCAATGATCTATAACTGGCCAGCTGACGAGGTAGACATGATTGTCTTGACAGATGGTAGTCGTATTCTTGGCTTGGGTGACCTTGGCGTTCAGGGCATTGGAATACCTATAGGAAAACTTGACATGTATGTTGCTGCTGCTGGTATCAACCCACGAAAAATACTTCCGGTTATGTTAGATGTTGGTACAAACAATGAAAAGCTACTAAAAGATCCCCTTTATTTAGGAGTTCGACAACCTAGGTTGGAAGGTGAAGAGTATCTATCGATTGTTGATGAATTCATGGAAGCTGTACACGCTCGATGGCCTAAAGCTATTGTGCAGTTTGAGGATTTCCAAATGAAGTGGGCTTTTGAAACCCTGAAACGATATAGAGAAAGGTTTTGCATGTTTAATGATGATATACAGGGCACGGCTGGTGTTGCACTTGCTGGGCTGTTGGGAACTGTAAGATCCCAAGGTCGACCATTGTCTGATTTTTTGAAACAAAAGATAGTTGTTGTTGGAGCTGGGAGTGCAGGGCTTGGTGTTCTTAAGATGGCTGTCCAGGCTGTTTCAAGAATGTCAGGGGGCAGTGGAACGGCTGCGAACAGCCAATTCTTTTTAATTGATAAAAATGGCCTTGTCACCACTGAAAGGAGCAATCTAGATCCAGCTGCAGTTCCATTTGCCAAAAATCCAAGAGATCTTGAAGGGCTTACAGAGGGTGCTAGTGTAATTGAAGTGGTTAAGAAGGTTAAGCCACATGTGCTACTTGGATTGTCTGGAGTTGGTGGTGTTTTTGACAAGGAGGTGCTTAAGGCAATGAGAGAATCTGCTTCAACAAAACCTGCTATCTTCGCAATGTCTAATCCCACTGTGAATGCTGAGTGCACTGCTATTGAAGCTTTCAGTCATGCTGGAGAAAATATAGTTTTTGCAAGTGGAAGCCCTTTTGACAATGTAGATCTCGGAAATCAAGTTGGCCATGTCAATCAAGCCAACAACATGTACCTGTTCCCAGGGATTGGTTTGGGTACACTTCTATCGGGTGCTCGTCATATAACAGATGAAATGGTGCGAGCAGCCGCCGAACGCCTTGCTTCATATATGACAGATGAGGAGGTCCAAAAAGGAATCTTGTATCCATCCATTGACTGTATTCGAAATGTTACAGCTGAAGTTGGAGCTGCTGTTATTGGTGCTGCAGTTGCAGAAAAACAGGCTGAAGGTCATGGTGATGTAGGGTTGAGAGAACTAGCAAACATGTCAAAAGAGGATACTGTGGAGTATGTGAGAAGCAATATGTGGTACCCTGAGTATTGCCCCCTCGTTCATGAAAAATAA 1800 0.4372 MWKVVRFAASRSRKFSTAIPGPCKVHKRGTDILHDPWFNKDTGFPITERDRLGLRGLLPPRVISFEHQYDRFMDSYRSLEKNTEGQADKFVSLSKWRILNRLHDRNEILYYRVLIDNIKEFAPIIYTPTVGLVCENYSGLFRRPRGMYFSAKDKGEMMSMIYNWPADEVDMIVLTDGSRILGLGDLGVQGIGIPIGKLDMYVAAAGINPRKILPVMLDVGTNNEKLLKDPLYLGVRQPRLEGEEYLSIVDEFMEAVHARWPKAIVQFEDFQMKWAFETLKRYRERFCMFNDDIQGTAGVALAGLLGTVRSQGRPLSDFLKQKIVVVGAGSAGLGVLKMAVQAVSRMSGGSGTAANSQFFLIDKNGLVTTERSNLDPAAVPFAKNPRDLEGLTEGASVIEVVKKVKPHVLLGLSGVGGVFDKEVLKAMRESASTKPAIFAMSNPTVNAECTAIEAFSHAGENIVFASGSPFDNVDLGNQVGHVNQANNMYLFPGIGLGTLLSGARHITDEMVRAAAERLASYMTDEEVQKGILYPSIDCIRNVTAEVGAAVIGAAVAEKQAEGHGDVGLRELANMSKEDTVEYVRSNMWYPEYCPLVHEK 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02516 599 PRINTS Malic enzyme signature 432 448 IPR001891 GO:0004470|GO:0004471
Phco3g02516 599 PRINTS Malic enzyme signature 109 133 IPR001891 GO:0004470|GO:0004471
Phco3g02516 599 PRINTS Malic enzyme signature 323 339 IPR001891 GO:0004470|GO:0004471
Phco3g02516 599 PRINTS Malic enzyme signature 205 227 IPR001891 GO:0004470|GO:0004471
Phco3g02516 599 PRINTS Malic enzyme signature 264 282 IPR001891 GO:0004470|GO:0004471
Phco3g02516 599 PRINTS Malic enzyme signature 169 198 IPR001891 GO:0004470|GO:0004471
Phco3g02516 599 PRINTS Malic enzyme signature 289 305 IPR001891 GO:0004470|GO:0004471
Phco3g02516 599 SMART malic_2 103 283 IPR012301 GO:0004471
Phco3g02516 599 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 293 596 IPR036291 -
Phco3g02516 599 PANTHER MALIC ENZYME-RELATED 15 592 - -
Phco3g02516 599 Gene3D - 291 599 - -
Phco3g02516 599 SMART Malic_M_2 293 555 IPR012302 GO:0051287
Phco3g02516 599 ProSitePatterns Malic enzymes signature. 289 305 IPR015884 GO:0004471
Phco3g02516 599 PIRSF ME 5 598 IPR001891 GO:0004470|GO:0004471
Phco3g02516 599 FunFam Malic enzyme 291 599 - -
Phco3g02516 599 Pfam Malic enzyme, N-terminal domain 103 283 IPR012301 GO:0004471
Phco3g02516 599 Gene3D - 27 290 IPR037062 GO:0004471
Phco3g02516 599 Pfam Malic enzyme, NAD binding domain 293 554 IPR012302 GO:0051287
Phco3g02516 599 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 13 292 IPR046346 -
Phco3g02516 599 FunFam Malic enzyme 27 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02516 Phco-Chr3 51893986 51900547 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02516 3 51893986 51900547 Phco3g02516 3 51893986 51900547 ECH
Phco3g02516 3 51893986 51900547 Phco1g00822 1 7639943 7647517 PCT