Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g02212 ATGTACCCATTAATTCACTCCTCACTCTCTCGCCCAACTCTTCCTTTTCTCTCTACAATAATGCCGGACCCTCACTCCACCACCGCGCTACCGCCGGAACAAACTGCGTCCGCCAGCTCTCAGACGCCGCCGGGCCGGTCACGCGAGGCGGAGCGTGTGCGCGGCACTTCCACCGGAGGCAACTGGAGTATCGGCGATGGCTCCATCGCTTTTAGAGACGAAACGTGTTCCTGCTTCGCCGTTATCTTCAGCTTTTGGTTATTCGTGTCGATGACTATGATACTGGGGGTTTATGGGTCCATAACCATCGTGCTTGGTCCAACATCTTCGATAGTTTTCCAACCTAGTTCGGTGTTCGTGAAATCTGTGCAGGTACAAAATTTGGTGGCAAACCCTGGACCAGGACCCATTCTTTACGGTACATATGGGGATCCCCCACTTGATGTTGTTAGCACTTGGGGTGAAACTCTTAATGTGTCTCTTCCCACTGGCGCAGAAAAGGAATGGAAAATTTATCTAAACAGAGGGAGTGTAATAAATATTTCGTATCACGTTAGTTCTAGGAGCTCTTCAGTTTTCCTTATAGTTGCACAAGGGAAGGAGACCTTCACTCGGTGGCTGGAGAACCCAACAGAACCTAATACAACTCTGTCGTGGAATGTGATTCATGGAAGTGGTATGATTACGCAGGAAATATTCTGGTCGTCCAGCTATTACGTGGCATTGGGTAATTTGGATGAGGACGTGGAGGTGGCATTAAACCTCAGTGTAACCTCCTCTTTGCATAATACAACAAATGCTTACTACAAATGCGCTCTTACCAGTAGTTCATGCACTTTAGATATTTGCTTTCTTGATGGAAGTGCAGCTGTTTTAGTTACTCCTGGTCCACAACAGAATGCATCCAATGAATGGTATATCAAACTGTCCTATGGACCAAGATGGGTAACCTATATTTTTGGCATTGGTGGATTGACTTTGCTTGTGTTTTGGACCTTCAATTTATTGAACAAGATTCAGTCTGTTCATGAAGATAGAGCAGTAGTTAGAACTGGGGGAACAGAACCTGAGAGAACCACTCTGCTTTCTAACAAAGATGATGATCTTTCAAGTTGGGGTTCATCATATGATTCCTTGCCACAAGACGAGGAGGATCTTGACTTTCTTCCAGGAGGCCCCATTGATGGGAAGCTTTCAGGTGATGGTGAAACCAGTAACAATACACGGCGTCTTTGTGCTATTTGCTTTGATGCTCCAAGGGACTGCTTCTTCCTTCCATGTGGGCACTGTGTGGCTTGTTTTGCATGTGGAACTAGGATAGCTGAGGCATCTGGTACTTGCCCTGTTTGTCGTAGGAACATGAAGAAGGTTAGGAAGATTTTCAATGTTTGA 1392 0.4612 MYPLIHSSLSRPTLPFLSTIMPDPHSTTALPPEQTASASSQTPPGRSREAERVRGTSTGGNWSIGDGSIAFRDETCSCFAVIFSFWLFVSMTMILGVYGSITIVLGPTSSIVFQPSSVFVKSVQVQNLVANPGPGPILYGTYGDPPLDVVSTWGETLNVSLPTGAEKEWKIYLNRGSVINISYHVSSRSSSVFLIVAQGKETFTRWLENPTEPNTTLSWNVIHGSGMITQEIFWSSSYYVALGNLDEDVEVALNLSVTSSLHNTTNAYYKCALTSSSCTLDICFLDGSAAVLVTPGPQQNASNEWYIKLSYGPRWVTYIFGIGGLTLLVFWTFNLLNKIQSVHEDRAVVRTGGTEPERTTLLSNKDDDLSSWGSSYDSLPQDEEDLDFLPGGPIDGKLSGDGETSNNTRRLCAICFDAPRDCFFLPCGHCVACFACGTRIAEASGTCPVCRRNMKKVRKIFNV 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g02212 463 Pfam Zinc finger, C3HC4 type (RING finger) 409 457 - -
Phco3g02212 463 ProSiteProfiles Zinc finger RING-type profile. 412 451 IPR001841 -
Phco3g02212 463 MobiDBLite consensus disorder prediction 25 46 - -
Phco3g02212 463 Pfam Domain of unknown function (DUF4792) 135 203 IPR032008 -
Phco3g02212 463 SUPERFAMILY RING/U-box 411 457 - -
Phco3g02212 463 PANTHER OS05G0521000 PROTEIN 70 462 - -
Phco3g02212 463 FunFam E3 ubiquitin-protein ligase APD2 401 462 - -
Phco3g02212 463 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 403 462 IPR013083 -
Phco3g02212 463 MobiDBLite consensus disorder prediction 25 59 - -
Phco3g02212 463 SMART ring_2 412 450 IPR001841 -
Phco3g02212 463 Pfam Domain of unknown function (DUF4793) 227 330 IPR032010 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g02212 Phco-Chr3 48389272 48401908 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g02212 3 48389272 48401908 Phco3g02212 3 48389272 48401908 ECH