Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01410 ATGAGAAATCAACATCCCATTTTGCATTGTACTTTCTTTTTGTTTCTCTTGTACCTTCTACTCAAAGCAGCTCCTACGAGTTGCAAGTTCACCATTGAGCCATGCTCTGACAATAACTCGTGCAATGCGCTTCTTGGCTACACCCTTTACACTGACCTCAAGGTCTCTGAGGTTGCTTCTCTCTTCCAAATAGACCCTATTGCACTTCTCACTGCCAATGCCATTGACATCTCGTACTCTGATGTAGAGCATCGCATTCTCCCTTCCAAACTCTTCCTCAAGGTCCCTATCACATGTTCCTGTGCTGATGGGATTAGAAAATCAGTGTCTGCCCATTACAGGACTCGTCCTTCTGATACTCTCTCTTCCATTGCGGATTCAGTGTATGGAGGTCTGGTGTCCCCTGATCAGCTTAGGGAGGCTAATTCTATAGCTGACCCTTCGGTGCTTGATGTGGGTCAGAACCTTGTGGTGCCACTTCCATGCACTTGCTTCAATGGCAGTGATAATTCTTTGCCTTCAATTTACCTCTCCTATGTGGTAAAGCCAATTGATACTTTGGCTGCCATTGCAGCTAGATATTTCACTACACTTACTGATTTGATGAATGTTAATGACATGGGGAGTGCTGCTATCTCTGATGGAGATATTCTTGCTGTTCCAATTCCTGCTTGTGCATCAAATTTTCCAAAATATGCCACTGATTTTGGCTTGCTTGTACCTAATGGAAGCTATACCATTGCAGCTAGTCACTGTGTGCAGTGTAGTTGTGGACCACAAAATTTAGATTTATACTGTATTCCCTCTTCTCTAGCTGTCTCTTGCTCCAGCATGCAATGCAAAAGAAGCAATCTTATACTTGGGAATGTTACCATGCAACAGATGAGCGCAGGTTGCAATGTGACATCGTGCAATTATGATGGTTTTGTCAATGGCAACATATTAACAACGATGTCCTCATCTCTTGAGCCTCATTGTCCAGGCCCGCAACGATTCCTTCCACTTATAGCGCCACCTACATCTGTTACAAGGGAATCAGTAGTTGCATTTCCTCCATCTCTATCACCATCGCAGACACCATTACTGTCACAGTCACCATCATCGAAATCAGAAGGAACAGGTCTAACAGCACCCAAATCTTCAGTCAAGCCTGCAACCAGATCATTTCCAGGATTCTCACCTGCAAATGGCCCTGTTGGTAGGATTGCTTCTGCTGCTCCCTCTTTGGTGAATCCTATTCCCATTTGGATGCTCTCATTTATGTTGTTGCTTATAAAGTTGATGATCCCAGTGGCTTTTTAA 1302 0.4401 MRNQHPILHCTFFLFLLYLLLKAAPTSCKFTIEPCSDNNSCNALLGYTLYTDLKVSEVASLFQIDPIALLTANAIDISYSDVEHRILPSKLFLKVPITCSCADGIRKSVSAHYRTRPSDTLSSIADSVYGGLVSPDQLREANSIADPSVLDVGQNLVVPLPCTCFNGSDNSLPSIYLSYVVKPIDTLAAIAARYFTTLTDLMNVNDMGSAAISDGDILAVPIPACASNFPKYATDFGLLVPNGSYTIAASHCVQCSCGPQNLDLYCIPSSLAVSCSSMQCKRSNLILGNVTMQQMSAGCNVTSCNYDGFVNGNILTTMSSSLEPHCPGPQRFLPLIAPPTSVTRESVVAFPPSLSPSQTPLLSQSPSSKSEGTGLTAPKSSVKPATRSFPGFSPANGPVGRIASAAPSLVNPIPIWMLSFMLLLIKLMIPVAF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01410 433 SUPERFAMILY LysM domain 177 222 IPR036779 -
Phco3g01410 433 CDD LysM 178 220 IPR018392 -
Phco3g01410 433 SUPERFAMILY LysM domain 112 160 IPR036779 -
Phco3g01410 433 CDD LysM 112 158 IPR018392 -
Phco3g01410 433 ProSiteProfiles LysM domain profile. 111 158 IPR018392 -
Phco3g01410 433 Gene3D LysM domain 168 229 IPR036779 -
Phco3g01410 433 Gene3D LysM domain 109 167 IPR036779 -
Phco3g01410 433 Pfam LysM domain 113 159 IPR018392 -
Phco3g01410 433 Pfam LysM domain 179 221 IPR018392 -
Phco3g01410 433 ProSiteProfiles LysM domain profile. 177 220 IPR018392 -
Phco3g01410 433 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 12 330 - -
Phco3g01410 433 SMART LysM_2 178 221 IPR018392 -
Phco3g01410 433 SMART LysM_2 112 159 IPR018392 -
Phco3g01410 433 MobiDBLite consensus disorder prediction 352 387 - -
Phco3g01410 433 MobiDBLite consensus disorder prediction 352 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01410 Phco-Chr3 14556039 14558332 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01410 3 14556039 14558332 Phco3g01410 3 14556039 14558332 ECH