Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01397 ATGGTTAAGCCTGAGATCAAGATCCACACAGAATCATCAAAGCCATTGAGACCACTATCTTCCTCATCATCACCACCATCAAGTGACAGCAAGAAGAAGTACAAGGGAGTGAGAATGAGAAGCTGGGGCTCATGGGTGTCAGAGATTAGAGCACCAAACCAAAAAACTAGAATATGGTTGGGATCTTATTCAACTGCTGAGGCAGCAGCAAGAGCCTATGATGCTGCCCTACTTTGCCTTAAGGGCTCCTCAGCCAATCTCAACTTCCCTTCAAGCTCCTCACACTACATTCCTCAAGACACTGCCATGTCCCCAAAATCAATCCAAAGAGTGGCTGCAGCAGCTGCCAACAACTTTTTGGACAATGCTATTGTTGCTACCACCCCATCTTCTCCACCTTCTCCTCCTCTTGCTTCAACATCTTCCTCTTCATTGGTCTCTTCCCCTTCAATGTCATCATCTCCCTCAGACCAAATTGATGATGATGTCTCACTTCTGTCACCATTTGGGGCCTACACTCCCCCTCCCCCTACTATTAACTGTGATCAACCAAATGATTCAATGGCTATGATGGAATCTTGGTATGGCTTGGAGGAGTTACAATCCCCAAAATATGTTGAGCAAATGCTAAGTGGGGCATTCTTTGACATTGATTCAACACAGTTGTTTGATGATCTGTATGAAGAAAGTGATATCCGTTTGTGGAGCTTCTGCTGA 717 0.4519 MVKPEIKIHTESSKPLRPLSSSSSPPSSDSKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSANLNFPSSSSHYIPQDTAMSPKSIQRVAAAAANNFLDNAIVATTPSSPPSPPLASTSSSSLVSSPSMSSSPSDQIDDDVSLLSPFGAYTPPPPTINCDQPNDSMAMMESWYGLEELQSPKYVEQMLSGAFFDIDSTQLFDDLYEESDIRLWSFC 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01397 238 CDD AP2 34 92 IPR001471 GO:0003700|GO:0006355
Phco3g01397 238 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Phco3g01397 238 FunFam ethylene-responsive transcription factor ERF014-like 32 92 - -
Phco3g01397 238 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Phco3g01397 238 MobiDBLite consensus disorder prediction 14 30 - -
Phco3g01397 238 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 171 - -
Phco3g01397 238 MobiDBLite consensus disorder prediction 127 159 - -
Phco3g01397 238 MobiDBLite consensus disorder prediction 137 159 - -
Phco3g01397 238 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Phco3g01397 238 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Phco3g01397 238 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Phco3g01397 238 PRINTS Ethylene responsive element binding protein signature 56 72 IPR001471 GO:0003700|GO:0006355
Phco3g01397 238 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Phco3g01397 238 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01397 Phco-Chr3 14225672 14226388 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Phco3g01397 AP2 5e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01397 3 14225672 14226388 Phco3g01397 3 14225672 14226388 ECH