Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01390 ATGAGGGCCGTGGTTGAAGGATCGTTGGTCGAGAGGTCTGACGACGCTGAAAAGGAAAAGAAGAAGAAGCGCCGATCCAATCGTCGATCCAAGCAAAACCCTTCCTTGACTTCAGCATCTGAAGTGAACGAGGCCCAGGGCATGTTGCCAGATTCAGGGAAAATTGAAATACCTATACATGCATCCACATCCTTGGAGGGTTCACTGAAGCAGGTTAATGTGGGTTCTCCTAATGAGCAAGGATTATCTAATGCATTAAATGTCGCTTTTACATCAATGCCCCCCATGCATATCAATGAGCGAGTGGAATCTGGTGATTTGCGAATTGTGCCTGTGTATGGTGGAGGAGTTGATTCTAAATCATTTTCTGAGCCCGCTGGTTGCAGAGGATCGGCGGGAATTAATAAAAACAAGGACTCAGTCCCTTGTGGTCCAATTCGGATTTGTGGCCAGAAAAGTTATTTTAGTCCACACTTGTCTTTAGAGGCTGTTGAGAAGGCATTAGAGAAGGGCGATGTTTTTAGAGCTCTCTTTCATGTCAATGCTCACAATCGAGTTGAGGCCTACTGCAAAATTGATGGAGTGCCAACTGACATTCTGATTAGTGGGATTCCAGCCCAGAATAGAGCTGTGGAAGGTGATATTGTTGCAGTTAAGATTGATCCCTTGCCATTGTGGACAAAAATGAAAGGGCCAAATGGGTCTTGTAACAACACTTCAACACCGGAAGGTTGCAACCTTTTTACAGAAGATAATGAAGTGGATAGTAAAGGGAAACATAAGGTAGATGCTGATCATGGGTCTGCCCATTACAGAAGCTATCCTGGTCAAAACAAGGAGGATGCTGATCAAAACTCCATATCCTATAGAAATGATTCTTTGACTGGAAAAAGAATTGTCTGCGAGGATAATACCTCCCAGGTTTCTACTAACCATTTAGATCTACTTGGAATAGCCAACCGGGACAGCATTAATGGACATCACTATGCTACTCCTGATTCCTTAAGGAACAATTCTTGTTGTGGACAAAGTGAAGTAGTTAATGCTGTGGAAAAGATGTGTTTGTTGGTTAATTCTGCCCCTTCTAAAAGACCAACTGGCAGGGTGGTCTCTATTATTGAGAGATCGCCTCGTTGGGAGGGTATTGTCGGTCATCTTAATGTGAAGCAGTGGGCTTCTTACAAGGACATAACCAAAAAGGATGCCAAGAAGAATAATAATTTGGTTTCTGATAATGATTACATCCAGATGATACCAACTGATCCAAAGTTTCCTAATATGATGCTTCTTGTTAGAAAGTTACCTAAGTGCATTATGCAAAGGTTGAAGAGTGGTGACATGACAATCGAAAAGGATCTGGTAGCTGCACAAATTGTTGGTTGGGTTGAAGAAAATCCTTTTCCCGAGGCTCACATCTTGTGTGTTTTTGGAAAAGGTGATGAAATTCAGACCCAATTAGATGCAATTTTATTTCAGAATGCAATATGTTTGTCTGAATTTTCTCCTGAAGCTCTGTCCTGTCTGCCGTGTGTTCCTTGGGAGGTACCACTGAAGGAAATTCAAAGTAGAATAGATCTCAGAAATTTGTGCATATTTACTATTGATCCTTCAACTGCCACTGATCTGGATGATGCACTGTCAATTGAGAAGTTATCTAATGGAAATTATAGAGTAGGTGTTCACATTGCTGATGTATCATATTTTGTTTTACCTAACACAGCCTTAGATAGTGAGGCTCAGTCTAGGTCAACATCTGTCTATATGTTACAAAGGAAGTTACCTATGTTGCCTGCATTATTATCAGAGAATATTGTTTCACTTAGTCCTGGAGTGGATCGACTTGCTGTTTCTATACTCCTGGATGTAAATCATGTGGGGGATGTTGTAGACCGTTGGATTGGTCGTTCTGTTATACACTCATGTTGTAAGCTTTCATATGACCATGCTCAGGACATCATTGACCGGGATTTTGATTTTGAAGGTTTAAACAACACTGAAGATCGCTATCCCAGAGTGTACGGCAATTTTGAATGGCCTGATGTTATTATGTCTTTGAAGAGTCTTTATGAAATTTCGAAAGTCTTGAAACGCAAGAGGTTTACTGATGGGGCTCTACGGCTTGAAAACCCTAAAGTTGTTATCTTGTTTGATGAAAATGGAGTTCCTTATGATAGTATGCTTTCTGAAAGGAAAGATTCAAATTTTCTTGTTGAGGAATATATGCTTTTGGCCAATACAGTTGCTGCTGAAGTCATATGCAGAGCTTATCCTGATGCTGCATTGTTAAGGAGGCATCCTGAACCTAATATGCGAAAGCTGAGAGAGTTTATGGCATTTTGTCAAAAGCATGGTTTTGAATTGAACACGACTTCCTCTGGTCAATTCCATTGGTCACTAGAGCAGATCAGGGAAAAGCTCAAGGGTGATCCTGTGCTATACTACATACTTATTTCTTATGCTACTCGGCCAATGCAGTTGGCTTCTTACTTCTGTAGTGGAGACTTAAAAGATAGTGAAAATGAATGGGGTCATTATGCTTTGGCTGTCCCATTTTACACTCATTTTACATCACCTCTGCGTCGGTATCCAGATATTATTGTTCACCGGACATTACTTGCTACCATAGAGGCTGAGGATTTGTATACGAAGCAGGTTAAGGAAATGGATGTGGAGAAAAGATGTTTCACAGGTATCAATTTTGATAAGAGTGCTGCAGAATCCATCAAAGGCAGGGAAGCACTATCAGCTGCAGCTGTGAAGTATATTGTTCCAGGTGCTGAAACACTTGCAAATATTGCTGCTCATTGCAATGAGAGAAAGCTAGCTAGCAGAAATGTTAAGGATGCCTGTGATAAACTTTACATATGGTTTCTCCTAAAGAAAAAGGAGGTCTTATTTTCAGAAGCTCGAATTCTGGGTCTTGGCCCGAGATTCATGTCAATTTACATTCAAAAGCTAGCTATTGAGCGACGCATATATTATGATGATGTTGAAGGCTTGACTGCAGAGTGGCTTGAAACAACATCCACATTGGTGCTTAGCATGTCTACTAATAGGTATACATTTAGGAGGGGTTGGTCTAACAAGTGGAGGGCGATTGAAGAAGTTGCACTGCTTTCTTGTCCGTATAACCAGAGTGATGTAATAAAAGTGGATGGTAATAAATCTGCAATGGACAGGGAGCCCATTTCAGGATCAGACAAAGCGGAAACTGAAATTGATCCCTCAGTTTTTCCTCTCACAGTGCATGTTCTTTCAACAATTCCAGTGGCTCTTCATGCTGTTGGTGGTGATGATGGGCCCCTTGATATTGGAGTAAGACTGTACATGAGCTCCTATTTTGGAGGCAAAGATTTTTATGGGATTAAAAGTTGA 3375 0.4107 MRAVVEGSLVERSDDAEKEKKKKRRSNRRSKQNPSLTSASEVNEAQGMLPDSGKIEIPIHASTSLEGSLKQVNVGSPNEQGLSNALNVAFTSMPPMHINERVESGDLRIVPVYGGGVDSKSFSEPAGCRGSAGINKNKDSVPCGPIRICGQKSYFSPHLSLEAVEKALEKGDVFRALFHVNAHNRVEAYCKIDGVPTDILISGIPAQNRAVEGDIVAVKIDPLPLWTKMKGPNGSCNNTSTPEGCNLFTEDNEVDSKGKHKVDADHGSAHYRSYPGQNKEDADQNSISYRNDSLTGKRIVCEDNTSQVSTNHLDLLGIANRDSINGHHYATPDSLRNNSCCGQSEVVNAVEKMCLLVNSAPSKRPTGRVVSIIERSPRWEGIVGHLNVKQWASYKDITKKDAKKNNNLVSDNDYIQMIPTDPKFPNMMLLVRKLPKCIMQRLKSGDMTIEKDLVAAQIVGWVEENPFPEAHILCVFGKGDEIQTQLDAILFQNAICLSEFSPEALSCLPCVPWEVPLKEIQSRIDLRNLCIFTIDPSTATDLDDALSIEKLSNGNYRVGVHIADVSYFVLPNTALDSEAQSRSTSVYMLQRKLPMLPALLSENIVSLSPGVDRLAVSILLDVNHVGDVVDRWIGRSVIHSCCKLSYDHAQDIIDRDFDFEGLNNTEDRYPRVYGNFEWPDVIMSLKSLYEISKVLKRKRFTDGALRLENPKVVILFDENGVPYDSMLSERKDSNFLVEEYMLLANTVAAEVICRAYPDAALLRRHPEPNMRKLREFMAFCQKHGFELNTTSSGQFHWSLEQIREKLKGDPVLYYILISYATRPMQLASYFCSGDLKDSENEWGHYALAVPFYTHFTSPLRRYPDIIVHRTLLATIEAEDLYTKQVKEMDVEKRCFTGINFDKSAAESIKGREALSAAAVKYIVPGAETLANIAAHCNERKLASRNVKDACDKLYIWFLLKKKEVLFSEARILGLGPRFMSIYIQKLAIERRIYYDDVEGLTAEWLETTSTLVLSMSTNRYTFRRGWSNKWRAIEEVALLSCPYNQSDVIKVDGNKSAMDREPISGSDKAETEIDPSVFPLTVHVLSTIPVALHAVGGDDGPLDIGVRLYMSSYFGGKDFYGIKS 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01390 1124 MobiDBLite consensus disorder prediction 1 49 - -
Phco3g01390 1124 Pfam Dis3-like cold-shock domain 2 (CSD2) 414 493 IPR041505 -
Phco3g01390 1124 Coils Coil 13 33 - -
Phco3g01390 1124 Gene3D - 149 243 - -
Phco3g01390 1124 Hamap DIS3-like exonuclease 2 [DIS3L2]. 18 1090 IPR028591 GO:0000175|GO:0034427
Phco3g01390 1124 SUPERFAMILY Nucleic acid-binding proteins 484 961 IPR012340 -
Phco3g01390 1124 SUPERFAMILY Nucleic acid-binding proteins 152 375 IPR012340 -
Phco3g01390 1124 PANTHER RIBONUCLEASE 21 1112 - -
Phco3g01390 1124 MobiDBLite consensus disorder prediction 7 21 - -
Phco3g01390 1124 ProSitePatterns Ribonuclease II family signature. 844 868 IPR022966 -
Phco3g01390 1124 Pfam RNB domain 523 875 IPR001900 GO:0003723|GO:0004540
Phco3g01390 1124 MobiDBLite consensus disorder prediction 31 45 - -
Phco3g01390 1124 Gene3D - 397 480 - -
Phco3g01390 1124 MobiDBLite consensus disorder prediction 257 284 - -
Phco3g01390 1124 FunFam DIS3-like exonuclease 2 145 247 - -
Phco3g01390 1124 SUPERFAMILY Nucleic acid-binding proteins 366 495 IPR012340 -
Phco3g01390 1124 SMART RNB_2 523 877 IPR001900 GO:0003723|GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01390 Phco-Chr3 14141648 14146571 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01390 3 14141648 14146571 Phco3g01390 3 14141648 14146571 ECH