Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01379 ATGCATTCCTTCTGCTGTGTCTTCGTCGTCTCTGACCACTCTTCTCCGGTCACCCTCGACATGCCCCCTATCCCCGCCGCATCCAGATCCGATCCTGCTCCTCGACCCGAACAAGCCCTCCTCTCCGTCACCAACGGCGGGGAAGGCGGCCGCGCGCACCCGCCGCCGGTTCCGGCCGCGGTGGACGTCAGGATCAAAGACCTCGTCGGGAACGGAATCTCCGGGATTCTGCACAAGTGGGTGAATTACGGCAAAGGATGGAGAACGCGCTGGTTTGTGCTTCAAGACGGCGTCCTCTCGTACTATAAAATTCACGGAAACGACAAGATCATCGTAAATTCCGAAACCGAGAAGGGATCGAAGGTCATTGGCGAGGAATCTGCGCGAATGATCTCTCGCAACCGCAATTCGAATCACGTCGACCGTCGCCGAAAGCCCGTCGGCGAAATCCATCTCAAGGTTTCGACTATTCGTGAGAGCAAGTCCGACGACAAGAGGTTTTCTGTTTTCACTGGGACTAAGACACTCCATTTGAGGGCGGAGACTCCTGATGATAGGGCGACATGGATGGAGGCCTTGCAGGCAGTGAAAGATATGTTTCCCCGGATATCCAACAGTGAGTTGATGGCACCAGTGGACAGTGTGGCTGTTTCCACTGAGAAACTGAGGCATCGGCTTATGGAGGAAGGAGTTAGTGAGGAAGCCATTCGGGACAGTGAACAAATAATGAGAAATGAGTATGCTGCGCTGCAAAACCAGCTTCTGCTGCTTAAACAAAAGCAGATGGCTCTAATCGACACTTTGCGGCAATTAGAGACAGAAAAGGTTGACCTGGAGAACACTGTGGTTGACGAAAGCCAAAGACAGTTGAATGATCAAGAGGTTTCTTCTGGATTAAGGCAGGAAAAATCTAGTGAAGCAAGTGCAACTGAGTCTGACGATGATAATGAGAGAAATGACGCAGCTGAGGAAGAAACAGATGATGAAGAAACTACCTTTTTTGACACTCGGGATTTCCTGTCATCGTCGAATTCTTTTAAAAGTAATGCTTCGGATATTAGGGTCTCGTCTTTCTCTTCAGATGATGGACTCTATGCCGTTGAATCTGAGGAGGATGTAGATCCTTCCATTAGATCTGTTGGAACCAACTATCCTTGTGTTAAGCGGCGAAAGAAATTACCTGATCCTGTTGAAAAGGAGAAAGGTGTCAGTCTTTGGTCAATGATTAAGGATAATATCGGGAAGGATCTAACAAAAGTTTGCCTTCCTGTTTATTTTAATGAGCCTCTCTCCTCTTTGCAAAAATGCTGTGAAGAAATGGAATACTCATATCTTCTAGACCGAGCATATGAATGGGGAAGAAGGGGTAATAGCCTCATGAGAATTCTCAATGTTGCTGCTTTTGCTGTATCTGCCTATGCTTCGACTGAAGGAAGAATCTGTAAACCATTTAACCCATTACTAGGGGAAACATATGAGGCTGACTTTCCTGATAAAGGCTTTCGATTTTTCTCAGAGAAGGTCAGTCACCACCCTATGATAGTTGCATGTCACTGTGAGGGTACAGGTTGGAAATTTTGTGGAGATAGCAACTTAAAGAGTAAATTTTGGGGTCGGTCAATTCAGCTTGATCCTGTTGGCATTTTGACTTTGGAATTTGATGATGGTGAAGTATTCCAGTGGAGTAAGGTTACCACATCAATATACAATCTCATATTGGGAAAGCTGTATTGTGATCATTATGGTACAATGCGAATACAGGGAAATCAAAATTACTCATGTAAACTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCACCAGGTTCATGGTATTGTTCAGGATAGAAACGGGAAAATATTGTCTACTTTGCTTGGAAAATGGGATGACAGCATGTATTATATAAATGGAGACTATAGTGGGAAGGACAAGGGTTATGAATCAATGTCAGATGCCCATCTAATATGGAAGCGGAGCAAGCCGCCCAAGTTCCCCACTAGATACAACTTCACTCGGTTTGCCATCACACTAAATGAACTTACCCCTGGATTAAAGGATAAGCTGCCACCAACTGATTCCAGGTTAAGACCTGACCAAAGGCATTTGGAAAATGGCGAGTATGAGAAGGCAAATTCAGAAAAATTGCGACTTGAACAGCGTCAACGTCAGGCTCGGAAAATGCAAGAGAGCGGTTGGGAACCACGGTGGTTTCGTAAGGATAAAGAGAGCGGTACCCACCGCTACTTGGGAGGGTATTGGGAGGCCCGAAAACAAGGAAATTGGAACTCATGTCCTGACATTTTTGGTCAAATTCCTTCTGATCATCTTTCAGACGAAGTTAAGGTTCCCCATGAAATTCTTGATAGTCAATCATTTAAAAATATGAGCAGAATTCTAGTGGAATCTCATGGTTTTCTCTTGCACCCCATGGAGCGTGTAAAAGATAAAATTAGCCCCGAACATCCACTCTTCTTGTCTCAGTTGGTGTAA 2496 0.4527 MHSFCCVFVVSDHSSPVTLDMPPIPAASRSDPAPRPEQALLSVTNGGEGGRAHPPPVPAAVDVRIKDLVGNGISGILHKWVNYGKGWRTRWFVLQDGVLSYYKIHGNDKIIVNSETEKGSKVIGEESARMISRNRNSNHVDRRRKPVGEIHLKVSTIRESKSDDKRFSVFTGTKTLHLRAETPDDRATWMEALQAVKDMFPRISNSELMAPVDSVAVSTEKLRHRLMEEGVSEEAIRDSEQIMRNEYAALQNQLLLLKQKQMALIDTLRQLETEKVDLENTVVDESQRQLNDQEVSSGLRQEKSSEASATESDDDNERNDAAEEETDDEETTFFDTRDFLSSSNSFKSNASDIRVSSFSSDDGLYAVESEEDVDPSIRSVGTNYPCVKRRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCCEEMEYSYLLDRAYEWGRRGNSLMRILNVAAFAVSAYASTEGRICKPFNPLLGETYEADFPDKGFRFFSEKVSHHPMIVACHCEGTGWKFCGDSNLKSKFWGRSIQLDPVGILTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNQNYSCKLKFKEQSIIDRNPHQVHGIVQDRNGKILSTLLGKWDDSMYYINGDYSGKDKGYESMSDAHLIWKRSKPPKFPTRYNFTRFAITLNELTPGLKDKLPPTDSRLRPDQRHLENGEYEKANSEKLRLEQRQRQARKMQESGWEPRWFRKDKESGTHRYLGGYWEARKQGNWNSCPDIFGQIPSDHLSDEVKVPHEILDSQSFKNMSRILVESHGFLLHPMERVKDKISPEHPLFLSQLV 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01379 831 Pfam Pleckstrin homology domain 78 194 - -
Phco3g01379 831 Pfam Oxysterol-binding protein 404 759 IPR000648 GO:0008289
Phco3g01379 831 SUPERFAMILY Oxysterol-binding protein-like 399 788 IPR037239 -
Phco3g01379 831 Coils Coil 709 729 - -
Phco3g01379 831 CDD PH_ORP_plant 73 205 - -
Phco3g01379 831 MobiDBLite consensus disorder prediction 686 715 - -
Phco3g01379 831 MobiDBLite consensus disorder prediction 284 334 - -
Phco3g01379 831 Coils Coil 240 288 - -
Phco3g01379 831 Gene3D - 701 773 - -
Phco3g01379 831 MobiDBLite consensus disorder prediction 691 715 - -
Phco3g01379 831 MobiDBLite consensus disorder prediction 316 332 - -
Phco3g01379 831 FunFam oxysterol-binding protein-related protein 1D isoform X1 490 662 - -
Phco3g01379 831 MobiDBLite consensus disorder prediction 284 305 - -
Phco3g01379 831 SUPERFAMILY PH domain-like 73 203 - -
Phco3g01379 831 SMART PH_update 71 200 IPR001849 -
Phco3g01379 831 ProSiteProfiles PH domain profile. 70 198 IPR001849 -
Phco3g01379 831 MobiDBLite consensus disorder prediction 20 56 - -
Phco3g01379 831 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 72 758 IPR000648 GO:0008289
Phco3g01379 831 Gene3D - 71 200 IPR011993 -
Phco3g01379 831 FunFam Oxysterol-binding protein-related protein 2A 701 772 - -
Phco3g01379 831 Gene3D - 490 664 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01379 Phco-Chr3 13890904 13898359 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01379 3 13890904 13898359 Phco3g01379 3 13890904 13898359 ECH