Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01375 ATGGCTCAAGTGGGTTCTCTCTGTGCCGAAATGGAGACCCTGAACCATGTTCTTTCCCTAGTGGAGGCATTCAGAGCATTCGACGTGGACAACGATGGGCGAATCACGAAGGCAGAGCTAGGAGGAATCTTCGGGTCACTAGGGTACAACGCTAGCGAGCAAGAAGTGACTGCAATGATGCAAGAAGGTGACAAGAACAAAGATGGGTTACTGAGCATACACGAGTTCTTGGAGATGAACACCAGGGACTTGGAGGGTGGGACTCTCGCGAGCACCCTCAGCACAGCGTTTGAAGTGTTGGATGAAGATGGGAACGAGATTCTGACCGGGGAAGACCTTCATGGAGTCATGCAAAACTTGGGTCTAGACTTGTCACTAGAGAACTGTCTGCATCTTGTTGCTTCTCTTGATGCAGACGGAGATGGAGCTGTGAGCTTGGATGAATTCAGACTCATTGTTGATTCCCTCCTCTGA 474 0.5021 MAQVGSLCAEMETLNHVLSLVEAFRAFDVDNDGRITKAELGGIFGSLGYNASEQEVTAMMQEGDKNKDGLLSIHEFLEMNTRDLEGGTLASTLSTAFEVLDEDGNEILTGEDLHGVMQNLGLDLSLENCLHLVASLDADGDGAVSLDEFRLIVDSLL 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01375 157 ProSitePatterns EF-hand calcium-binding domain. 28 40 IPR018247 -
Phco3g01375 157 SMART efh_1 55 83 IPR002048 GO:0005509
Phco3g01375 157 SMART efh_1 92 120 IPR002048 GO:0005509
Phco3g01375 157 SMART efh_1 128 156 IPR002048 GO:0005509
Phco3g01375 157 SMART efh_1 19 47 IPR002048 GO:0005509
Phco3g01375 157 FunFam Calmodulin-3 9 155 - -
Phco3g01375 157 ProSiteProfiles EF-hand calcium-binding domain profile. 15 50 IPR002048 GO:0005509
Phco3g01375 157 SUPERFAMILY EF-hand 16 153 IPR011992 -
Phco3g01375 157 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Phco3g01375 157 Gene3D - 14 155 - -
Phco3g01375 157 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
Phco3g01375 157 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 19 79 - -
Phco3g01375 157 CDD EFh 20 79 IPR002048 GO:0005509
Phco3g01375 157 ProSiteProfiles EF-hand calcium-binding domain profile. 124 157 IPR002048 GO:0005509
Phco3g01375 157 Pfam EF-hand domain pair 21 79 IPR002048 GO:0005509
Phco3g01375 157 Pfam EF-hand domain pair 93 150 IPR002048 GO:0005509
Phco3g01375 157 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
Phco3g01375 157 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01375 Phco-Chr3 13748724 13749197 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01375 3 13748724 13749197 Phco3g01375 3 13748724 13749197 ECH