Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01373 ATGGCGGCTTCCGTTGGCAACCGTCAATTCGCCACTCATATAAACGGCGTCGTTCGCAGTTGCGGGCAGGAACTGAAGCCCTCTCTGCCGTTGGATTTTGACTTCGACTCCTCCAGCAGCGACGACGATGAAAACGACGACGCTTCGTATCTGAAAGAGCTCGTACGAAAAGCAAACGCGGAAACGGAAGCATCAGTTATGGACCCGCGCGACGAGGGAACGGCGGATCAGTGGGTCGCACGGAACGCCTCCATGGTCCGCCTCACTGGGAAGCATCCCTTCAACGCGGAGTCCCCCTTGCAGCGCCTCATGCACCACGGCTTCATCACTCCAGTCCCACTCCACTACGTCCGCAACCACGGTCCAGTTCCCAAGGCCAACTGGGAAGACTGGACCGTCGAAATAACTGGTCTTGTCAAGCGCCCAACCCGGTTCACCATGGACCGCCTCGTGCGCGACTTTCCCCACCGCGAGTTCCCCGCCACGCTCGTCTGCGCCGGTAACCGCCGCAAGGAGCAGAACATGGTCAAGAAGACCATCGGCTTCAACTGGGGCTCTGCCGGCACCTCCACCTCCGTGTGGCGCGGCGTGCCGCTGCGCCACGTGCTGCGCCGTTGCGGGATCCTGACACGTGGGAAGGGAGCTCTGCACGTGTCCTTCGAGGGCGCCGAGAATCTCCCCGGCGGCGGCGGGTCCAAGTACGGAACGAGCATCTCGAGGGAGATGGCCATGGACCCTTCGCGCGACATCATCCTGGCGTACATGCAAAACGGCGAGCCTCTGGCACCGGATCACGGCTTCCCCATTCGCATGATTATTCCGGGGTTTATCGGTGGCAGAATGGTGAAGTGGCTAAAACGCATTGTGGTTACTGAACATGAGTGCGAAAGTCATTATCATTACAAGGATAACAGAGTTCTTCCTTCCCATGTTGATCCAGAACTTGCTAATGAAGAAGGTTGGTGGTACAAACCAGAGTACATAATCAACGAGTTGAATATAAACTCAGTGATAACGACTCCTTGTCACGATGAGATATTGCCCATCAACTCATGGACAACGCAGAGGCCTTACGTAGTCAGAGGCTACGCATATTCTGGTGGTGGAAGGAAAGTGACACGTGTGGAGGTAACACTGGACGGTGGAGAAACATGGCACGTGTGCACACTGGATCATCCTGAGAAACCTAACAAATATGGAAAGTATTGGTGCTGGTGCTTCTGGTCTTTGGAGGTGGAGGTGCTGGACCTGCTTGGGACCAAAGAGATTGCAGTTCGAGCTTGGGATGAAGGCCTCAACACGCAGCCAGAAAACCTAATTTGGAATCTTATGGGCATGATGAACAACTGTTGGTTTAGAGTGAAAACAAATGTGTGCAAGCCCCACAAGGGTGAGATTGGCATAGTGTTTGAACACCCAACCCAACCAGGGAACCAACCTGGTGGGTGGATGGCGAAGGAAAAGCATTTGGAGCAATCACAGGAGCCGAAACCAAGCCTTAAAAAGAGTGTGTCTACGCCATTCATGAACACTGCCTCAAAAATGTTCTCCATCTCCGAAGTAAAAAAACATAGCAGCCCTGACTCAGCTTGGATCATTGTCCATGGTCACGTCTACGACTGCTCCCGCTTCCTCAAAGATCACCCTGGTGGCACCGACAGCATCCTCATCAATGCCGGCACTGACTGCACGGAAGAGTTTGACGCCATCCACTCTGACAAAGCAAAGAAGATGCTCGAAGACTATCGTATTGGCGAGCTCATCACTACAGGTTACACCTCAGCAGACTCATCGCCGAACAACTCCGTGCATGGCAATTCCGAATTCACCCATTTGGCTCCTATCAATGAAATCACTACAACACCACCGCTACCACCACGTAGTGTGGCTCTCAACCCACGCCAGAAAATCCCATGCAAACTCGTGTCAAAGACCTCCATTTCCCACGATGTGAGGCTTTTCCGTTTCGAAATGCCGTCAAAGAATCAACTCTTAGGTTTACCAGTGGGTAAGCACATTTTCTTGTGCGCCACCATAGATGGCAAGCTATGCATGCGAGCCTACACTCCAACAAGTAGCGTGGAGGAAGTGGGGTTCTTCGATTTGCTCATCAAGGTTTACTTCAAAGACGTGCACCCTAAGTTCCCAAACGGAGGACTTATGTCACAGTATTTAGAATCTCTCTCCATAGGATCCATGTTAGACGTGAAGGGTCCATTGGGTCACATAGAGTACACTGGAAGAGGCAATTTCACTGTTCATGGGAAATCCAGATTCGCAAAGAGGTTAGCCATGCTGGCCGGTGGAACTGGCATCACACCAATTTACCAAGTGGCGCAAGCGATTCTGAAGGACCCAGAGGACCTCACCGAAATGCATGTGGTGTATGCAAACCGCACAGAGGATGATATTCTGCTGAGAGAGGAGTTGGATGCATGGGCGAAAGAACATTGTGAGCGGTTCAAGGTGTGGTACGTTGTGGAAACCGCGAAGGAAGGGTGGGGATACGGTGTGGGGTTCATCACAGAAACCATCATGAGGGAGCACCTTCCAGAAGCGTCAAGCGATTCCTTGGCTATGACGTGTGGACCACCACCCATGATTCAGTTCGCGGTGCAGCCTAATTTGGAGAAGATGGGTTACGATATCAAGAATGATTTGCTCGTGTTTTAG 2673 0.5245 MAASVGNRQFATHINGVVRSCGQELKPSLPLDFDFDSSSSDDDENDDASYLKELVRKANAETEASVMDPRDEGTADQWVARNASMVRLTGKHPFNAESPLQRLMHHGFITPVPLHYVRNHGPVPKANWEDWTVEITGLVKRPTRFTMDRLVRDFPHREFPATLVCAGNRRKEQNMVKKTIGFNWGSAGTSTSVWRGVPLRHVLRRCGILTRGKGALHVSFEGAENLPGGGGSKYGTSISREMAMDPSRDIILAYMQNGEPLAPDHGFPIRMIIPGFIGGRMVKWLKRIVVTEHECESHYHYKDNRVLPSHVDPELANEEGWWYKPEYIINELNINSVITTPCHDEILPINSWTTQRPYVVRGYAYSGGGRKVTRVEVTLDGGETWHVCTLDHPEKPNKYGKYWCWCFWSLEVEVLDLLGTKEIAVRAWDEGLNTQPENLIWNLMGMMNNCWFRVKTNVCKPHKGEIGIVFEHPTQPGNQPGGWMAKEKHLEQSQEPKPSLKKSVSTPFMNTASKMFSISEVKKHSSPDSAWIIVHGHVYDCSRFLKDHPGGTDSILINAGTDCTEEFDAIHSDKAKKMLEDYRIGELITTGYTSADSSPNNSVHGNSEFTHLAPINEITTTPPLPPRSVALNPRQKIPCKLVSKTSISHDVRLFRFEMPSKNQLLGLPVGKHIFLCATIDGKLCMRAYTPTSSVEEVGFFDLLIKVYFKDVHPKFPNGGLMSQYLESLSIGSMLDVKGPLGHIEYTGRGNFTVHGKSRFAKRLAMLAGGTGITPIYQVAQAILKDPEDLTEMHVVYANRTEDDILLREELDAWAKEHCERFKVWYVVETAKEGWGYGVGFITETIMREHLPEASSDSLAMTCGPPPMIQFAVQPNLEKMGYDIKNDLLVF 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01373 890 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 634 746 IPR017927 GO:0016491
Phco3g01373 890 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 513 588 IPR001199 -
Phco3g01373 890 SMART Cyt_b5_2 516 588 IPR001199 -
Phco3g01373 890 SUPERFAMILY Oxidoreductase molybdopterin-binding domain 68 329 IPR036374 -
Phco3g01373 890 Pfam Cytochrome b5-like Heme/Steroid binding domain 519 587 IPR001199 -
Phco3g01373 890 CDD cyt_b5_reduct_like 639 890 - -
Phco3g01373 890 Gene3D Translation factors 627 740 - -
Phco3g01373 890 FunFam NADH-cytochrome b5 reductase 625 740 - -
Phco3g01373 890 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 734 884 IPR039261 -
Phco3g01373 890 PRINTS Cytochrome B5 signature 563 570 IPR001199 -
Phco3g01373 890 PRINTS Cytochrome B5 signature 538 548 IPR001199 -
Phco3g01373 890 PRINTS Cytochrome B5 signature 575 587 IPR001199 -
Phco3g01373 890 PRINTS Cytochrome B5 signature 548 562 IPR001199 -
Phco3g01373 890 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 512 590 IPR036400 -
Phco3g01373 890 Pfam Oxidoreductase molybdopterin binding domain 120 299 IPR000572 -
Phco3g01373 890 Gene3D - 90 330 IPR036374 -
Phco3g01373 890 Gene3D - 509 590 IPR036400 -
Phco3g01373 890 ProSitePatterns Eukaryotic molybdopterin oxidoreductases signature. 137 172 IPR022407 GO:0043546
Phco3g01373 890 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 686 693 IPR001709 GO:0016491
Phco3g01373 890 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 802 813 IPR001709 GO:0016491
Phco3g01373 890 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 858 866 IPR001709 GO:0016491
Phco3g01373 890 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 764 783 IPR001709 GO:0016491
Phco3g01373 890 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 790 799 IPR001709 GO:0016491
Phco3g01373 890 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 547 557 IPR001709 GO:0016491
Phco3g01373 890 PIRSF Nitr_rd_NADH 8 889 IPR012137 GO:0006809|GO:0042128|GO:0050464
Phco3g01373 890 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 544 551 IPR018506 GO:0020037
Phco3g01373 890 PRINTS Cytochrome B5 reductase signature 858 866 - -
Phco3g01373 890 PRINTS Cytochrome B5 reductase signature 665 676 - -
Phco3g01373 890 PRINTS Cytochrome B5 reductase signature 731 745 - -
Phco3g01373 890 PRINTS Cytochrome B5 reductase signature 764 783 - -
Phco3g01373 890 PRINTS Cytochrome B5 reductase signature 686 693 - -
Phco3g01373 890 PRINTS Cytochrome B5 reductase signature 802 813 - -
Phco3g01373 890 FunFam Nitrate reductase 72 321 - -
Phco3g01373 890 PRINTS Eukaryotic molybdopterin domain signature 172 184 IPR008335 GO:0016491
Phco3g01373 890 PRINTS Eukaryotic molybdopterin domain signature 245 261 IPR008335 GO:0016491
Phco3g01373 890 PRINTS Eukaryotic molybdopterin domain signature 329 341 IPR008335 GO:0016491
Phco3g01373 890 PRINTS Eukaryotic molybdopterin domain signature 187 202 IPR008335 GO:0016491
Phco3g01373 890 PRINTS Eukaryotic molybdopterin domain signature 86 100 IPR008335 GO:0016491
Phco3g01373 890 PRINTS Eukaryotic molybdopterin domain signature 426 438 IPR008335 GO:0016491
Phco3g01373 890 PRINTS Eukaryotic molybdopterin domain signature 262 275 IPR008335 GO:0016491
Phco3g01373 890 PRINTS Eukaryotic molybdopterin domain signature 360 374 IPR008335 GO:0016491
Phco3g01373 890 PRINTS Eukaryotic molybdopterin domain signature 278 291 IPR008335 GO:0016491
Phco3g01373 890 PRINTS Eukaryotic molybdopterin domain signature 374 386 IPR008335 GO:0016491
Phco3g01373 890 PRINTS Eukaryotic molybdopterin domain signature 401 411 IPR008335 GO:0016491
Phco3g01373 890 PRINTS Eukaryotic molybdopterin domain signature 161 172 IPR008335 GO:0016491
Phco3g01373 890 PRINTS Eukaryotic molybdopterin domain signature 108 124 IPR008335 GO:0016491
Phco3g01373 890 PRINTS Eukaryotic molybdopterin domain signature 439 452 IPR008335 GO:0016491
Phco3g01373 890 Pfam Oxidoreductase NAD-binding domain 765 872 IPR001433 GO:0016491
Phco3g01373 890 Gene3D - 331 506 - -
Phco3g01373 890 FunFam Nitrate reductase [NADH] 741 890 - -
Phco3g01373 890 MobiDBLite consensus disorder prediction 477 504 - -
Phco3g01373 890 FunFam Nitrate reductase 509 590 - -
Phco3g01373 890 SUPERFAMILY Riboflavin synthase domain-like 627 746 IPR017938 -
Phco3g01373 890 PANTHER SULFITE REDUCTASE 59 461 - -
Phco3g01373 890 Pfam Oxidoreductase FAD-binding domain 639 745 IPR008333 -
Phco3g01373 890 CDD eukary_NR_Moco 71 456 - -
Phco3g01373 890 Gene3D - 741 885 IPR039261 -
Phco3g01373 890 Pfam Mo-co oxidoreductase dimerisation domain 327 458 IPR005066 GO:0016491|GO:0030151
Phco3g01373 890 FunFam Nitrate reductase 331 507 - -
Phco3g01373 890 SUPERFAMILY E set domains 331 458 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01373 Phco-Chr3 13726010 13732172 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01373 3 13726010 13732172 Phco3g01373 3 13726010 13732172 ECH